User: elisheva

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elisheva70
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Location:
Israel
Last seen:
5 days, 14 hours ago
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1 year ago
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Posts by elisheva

<prev • 83 results • page 1 of 9 • next >
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Problem with loacting gtf file
... Hi everyone! I have this expression file (UCSC genes, hg19): tracking_id FPKM FPKM 0 FPKM_status FPKM_status DDX11L1 0.0220335 0.014392 0.0182127 OK OK WASH7P 0.325992 0.242878 0.284435 OK OK MIR6859-1 0 0 0 OK OK FAM138A 0.00576753 0.00565091 0.00570922 OK OK ...
gtf gene ucsc written 5 days ago by elisheva70 • updated 5 days ago by genomax39k
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Comment: C: Getting 3D model
... Thanks!! That was very helpful. Is there is a simple way to save it as a movie? ...
written 4 weeks ago by elisheva70
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Comment: C: Getting 3D model
... Thanks a lot. But as I mentioned: I'm looking for a molecule, not a protein. What makes PDB irrelevant I think. And another remark: I woul'd like to presemt the animation on ppt. ...
written 4 weeks ago by elisheva70
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Getting 3D model
... Hi everyone! I am trying to download 3D model of Oxaloacetate. Which I can present as animation. Is there is a simple way to do it? (for free of course) Thanks a lot!! ...
3d oxaloacetate written 4 weeks ago by elisheva70 • updated 4 weeks ago by Kevin Blighe9.0k
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Comment: C: c.elegans W220 genes
... When I tried this command: sort -u c_elegans.WS220.annotations.gff3 | cut -f 3 | grep "gene" | wc -l I got 48549. May I have a mistake? ...
written 5 weeks ago by elisheva70
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Comment: C: c.elegans W220 genes
... Thanks a lot!! And just to make sure (I am not familiar with gff format): if I'm interested only the genes, Should I select only the rows that at the 9 column the value is: ID= Gene ? Because if it does I have a proble ...
written 5 weeks ago by elisheva70
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Comment: C: c.elegans W220 genes
... I tried it already. but there is no genes information there. It's only genomic data or transcripts. Or gff files - which don't have chromosome and it's 1-base offset. ...
written 5 weeks ago by elisheva70
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c.elegans W220 genes
... Hi everyone! Does anybody knows where can I find c.elegans WS220 genes? I tried to look at wormBase website. But when I'm trying the data freezes option - WS220 - I get WS230. If there is other ways to get this data (BED file or gtf file) it will be very ...
database c.elegans written 5 weeks ago by elisheva70 • updated 5 weeks ago by Carlo Yague3.5k
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Comment: C: Finding genes expression levels full data sets
... Thanks a lot. I took a look, But all the results are experiments results. What if I want all genes expression levels for WT? ...
written 7 weeks ago by elisheva70
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Finding genes expression levels full data sets
... Hi everyone. I have a very beginners question I need to get all genes expression levels data of drosophila, c.elegans and yeast. For yeast I found on the sgd website: https://downloads.yeastge ...
expression datasets written 7 weeks ago by elisheva70 • updated 7 weeks ago by LLTommy1.2k

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