User: elisheva

gravatar for elisheva
elisheva70
Reputation:
70
Status:
Trusted
Location:
Israel
Last seen:
4 days, 5 hours ago
Joined:
1 year, 7 months ago
Email:
e***********@gmail.com

Posts by elisheva

<prev • 90 results • page 1 of 9 • next >
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Comment: C: deepTools plot profile problem
... Thanks to you and @EagleEye, it worked!! ...
written 8 days ago by elisheva70
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deepTools plot profile problem
... Hi everyone! I hope that someone who familiar with deepTools could help me. I've got into a problem while trying to plot profile using deepTools plotProfile option. I tried to add a title to the graph by the following command: --plotTitle ...
deeptools title profile written 8 days ago by elisheva70 • updated 8 days ago by Devon Ryan80k
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Comment: C: Plotting average profiles
... This tool requires bigWig file. How can I generate such file, if I have only the bed files? And how can I enter the damage level into it? I tried to use bedGraphToBigWig command, But I get this error: "Overlapping regions in bedGraph line 17 of tmp_so ...
written 5 weeks ago by elisheva70
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Plotting average profiles
... Hi everyone! I have bed files of damage rates that I'd like to display graphically. For example, I have these 2 files where column number 8 is the normalized damage rate: File A: chr1 1090351 1093351 1 0 - 11 0.00366667 chr1 1 ...
R bioconductor written 5 weeks ago by elisheva70
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Comment: C: The efficient way to generate fasta and bed files
... Thank a lot for the solution, but for some reason, it took even much time ...
written 10 weeks ago by elisheva70
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The efficient way to generate fasta and bed files
... Hi everyone! I have big fasta files (about 1-2 GB ) received by bedtools getfasta command each file has a header with information (chromosome, coordinates, and strand) and a sequence of 10 nucleotides. I have to select only the sequences which have pyrimidines in 4-5 columns and gene ...
fasta python bed written 10 weeks ago by elisheva70
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Scatterplot with hexbin
... Hi everyone! I have to plot a Scatterplot. I tried to use the hexbin library, but I can't the axis's limits. And I also tried to add abbline with no success. Here is my code: bin<-hexbin(levelsTable$AA.TT,levelsTable$Expr ...
hexbin R plot written 5 months ago by elisheva70 • updated 5 months ago by Nicolas Rosewick6.3k
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Problem with loacting gtf file
... Hi everyone! I have this expression file (UCSC genes, hg19): tracking_id FPKM FPKM 0 FPKM_status FPKM_status DDX11L1 0.0220335 0.014392 0.0182127 OK OK WASH7P 0.325992 0.242878 0.284435 OK OK MIR6859-1 0 0 0 OK OK FAM138A 0.00576753 0.00565091 0.00570922 OK OK ...
gtf gene ucsc written 6 months ago by elisheva70 • updated 6 months ago by genomax49k
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Comment: C: Getting 3D model
... Thanks!! That was very helpful. Is there is a simple way to save it as a movie? ...
written 7 months ago by elisheva70
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Comment: C: Getting 3D model
... Thanks a lot. But as I mentioned: I'm looking for a molecule, not a protein. What makes PDB irrelevant I think. And another remark: I woul'd like to presemt the animation on ppt. ...
written 7 months ago by elisheva70

Latest awards to elisheva

Great Question 14 days ago, created a question with more than 5,000 views. For needleman-wunsch algorithm on python
Popular Question 19 days ago, created a question with more than 1,000 views. For Writing a csv file python
Supporter 10 weeks ago, voted at least 25 times.
Popular Question 6 months ago, created a question with more than 1,000 views. For find ORF in sequence python
Popular Question 13 months ago, created a question with more than 1,000 views. For needleman-wunsch algorithm on python

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