User: elisheva

gravatar for elisheva
elisheva70
Reputation:
70
Status:
Trusted
Location:
Israel
Last seen:
1 week, 3 days ago
Joined:
1 year, 10 months ago
Email:
e***********@gmail.com

Posts by elisheva

<prev • 95 results • page 1 of 10 • next >
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Comment: C: bedtools intersect issue
... That's really weird, and yes, for the example I posted I get an output as I posted either. ...
written 24 days ago by elisheva70
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Comment: C: bedtools intersect issue
... I am using version: v2.26.0 ...
written 24 days ago by elisheva70
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Comment: C: bedtools intersect issue
... I edited the post, but those are only the first 10 lines, actually, they have overlap, as you can see in the first result. ...
written 24 days ago by elisheva70
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Comment: C: bedtools intersect issue
... Yes, I know, but that what I want to get eventually. ...
written 24 days ago by elisheva70
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bedtools intersect issue
... Hi everyone! I have 2 bed files: A.bed chr1 1090377 1090381 1 1 + chr1 1090377 1090381 1 1 + chr1 1090415 1090419 1 1 + chr1 1090425 1090429 1 1 + chr1 1090442 1090446 1 1 - chr ...
bedtools intersect bed file written 24 days ago by elisheva70 • updated 14 days ago by Biostar ♦♦ 20
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Comment: C: deepTools plot profile problem
... Thanks to you and @EagleEye, it worked!! ...
written 3 months ago by elisheva70
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deepTools plot profile problem
... Hi everyone! I hope that someone who familiar with deepTools could help me. I've got into a problem while trying to plot profile using deepTools plotProfile option. I tried to add a title to the graph by the following command: --plotTitle ...
deeptools title profile written 3 months ago by elisheva70 • updated 3 months ago by Devon Ryan84k
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Comment: C: Plotting average profiles
... This tool requires bigWig file. How can I generate such file, if I have only the bed files? And how can I enter the damage level into it? I tried to use bedGraphToBigWig command, But I get this error: "Overlapping regions in bedGraph line 17 of tmp_so ...
written 4 months ago by elisheva70
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Plotting average profiles
... Hi everyone! I have bed files of damage rates that I'd like to display graphically. For example, I have these 2 files where column number 8 is the normalized damage rate: File A: chr1 1090351 1093351 1 0 - 11 0.00366667 chr1 1 ...
R bioconductor written 4 months ago by elisheva70
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Comment: C: The efficient way to generate fasta and bed files
... Thank a lot for the solution, but for some reason, it took even much time ...
written 5 months ago by elisheva70

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Popular Question 21 days ago, created a question with more than 1,000 views. For Best way to processing huge fasta files using python.
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