User: elisheva

gravatar for elisheva
elisheva70
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Location:
Israel
Last seen:
2 weeks, 1 day ago
Joined:
11 months ago
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Posts by elisheva

<prev • 73 results • page 1 of 8 • next >
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plotting average dinucleotides ratio profile
... Hi everyone! I am really new with R - so my question might be simple: I have to plot average dinucleotides ratio profile over genes in each position upstream and downstream the TSS. something like that :[plot][1] By given a bed file with all these coordinates. For exampl ...
R bioconductor written 15 days ago by elisheva70
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Comment: C: Finding S. cerevisiae mRNA of specific genes from SGD db.
... It works now, Thanks!! ...
written 20 days ago by elisheva70
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Comment: C: Finding S. cerevisiae mRNA of specific genes from SGD db.
... I know, but I am trying it and i get: Permission denied. Should I install this tool or something like this? I downloaded it but it's a executable file. ...
written 20 days ago by elisheva70
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Comment: C: Finding S. cerevisiae mRNA of specific genes from SGD db.
... Thanks a lot. I am not familiar with this tool. How can I run it from the command line? I can't open it. ...
written 20 days ago by elisheva70
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Comment: C: Finding S. cerevisiae mRNA of specific genes from SGD db.
... If it wasn't clear: I have a list of genes and I want to download all their mRNAs into 1 fasta file. I'ts about 600 genes, so I can't do it manually. ...
written 20 days ago by elisheva70
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Finding S. cerevisiae mRNA of specific genes from SGD db.
... Hi everyone! I have a problem with finding S. cerevisiae mRNA. I have a list of genes names from SGD. For example a few genes `Q0275 ...
mrna sgd assembly written 21 days ago by elisheva70 • updated 20 days ago by genomax34k
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Comment: C: Best way to generate a bed file
... Maybe I didn't understand your answer... what does it mean $10? Isn't it simply column 10? ...
written 10 weeks ago by elisheva70
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Comment: C: Best way to generate a bed file
... I edited my post, so you can see now.... And no, I have one Id per line and then all the exons coordinates ...
written 10 weeks ago by elisheva70
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Comment: C: Best way to generate a bed file
... Thanks! About your question: that's my data.... But I have one more problem - I just gave an example - the number of exons for each gene is different. ...
written 10 weeks ago by elisheva70
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Best way to generate a bed file
... Hello everyone! I have to do something and I kind of lost. I have 2 tab delimited text files which contains exons coordinates. the first fie contains the start coordinates (for example): NM_032291 chr1 + 66999638 67091529 67098752 67101626 NM_001308203 chr1 + 66999251 66999928 67 ...
exons bed file written 10 weeks ago by elisheva70 • updated 10 weeks ago by geek_y8.0k

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Popular Question 5 months ago, created a question with more than 1,000 views. For needleman-wunsch algorithm on python

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