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Comment: Comment: Obtaining clinical data from the TCGA data portal
14 months ago by elisheva ▴ 120
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2
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1.0k
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Obtaining clinical data from the TCGA data portal
Cancer hg38 TCGA
14 months ago by elisheva ▴ 120
0
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2
replies
1.5k
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Obtaining Infinium Methylation450K manifest for hg38
TCGA hg38 methylation Illumina
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 120
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0
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450
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Get metadat from the ICGC data portal
hg38 ICGC Cancer
20 months ago by elisheva ▴ 120
0
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0
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738
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Using DANPOS2 to determine nucleosome positions
MNase-seq DANPOS ENCODE bigwig
2.8 years ago by elisheva ▴ 120
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1
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3.8k
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Comment: Comment: star --readFilesIn error when using unmapped.out.mate1/2 files
3.1 years ago by elisheva ▴ 120
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0
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1.5k
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Comment: Comment: Bedmethyl
3.5 years ago by elisheva ▴ 120
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1
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1.1k
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Answer: Answer: how to handle duplicate reads in unpaired Whole Exome Sequence
3.6 years ago by elisheva ▴ 120
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0
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5.7k
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Answer: Answer: make a BED file with exons only
3.6 years ago by elisheva ▴ 120
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2
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1.0k
views
Covid variant sequences
FASTA VCF variants Covid
updated 3.6 years ago by 154k • written 3.6 years ago by ▴ 120
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0
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6.7k
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Comment: Comment: Identifying mutations in an aligment
3.9 years ago by elisheva ▴ 120
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1
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1.9k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
4.4 years ago by elisheva ▴ 120
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1
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1.9k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
4.4 years ago by elisheva ▴ 120
2
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1
reply
1.6k
views
Error with SRA Toolkit prefetch command
timeout sra ncbi https
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 120
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1
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1.8k
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Comment: C: Comparison of allele frequencies between population
4.8 years ago by elisheva ▴ 120
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1
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1.8k
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Comment: C: Comparison of allele frequencies between population
4.9 years ago by elisheva ▴ 120
4
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5
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1.8k
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Comparison of allele frequencies between population
SNP vcf 1000 genome project population
updated 4.9 years ago by 11k • written 4.9 years ago by ▴ 120
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0
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18k
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Comment: C: How to download VCF of 1000 genome project with population frequencies?
4.9 years ago by elisheva ▴ 120
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0
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2.0k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
5.3 years ago by elisheva ▴ 120
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1
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2.0k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
5.4 years ago by elisheva ▴ 120
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2
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1.1k
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Finding enhancers of the whole human body
enhancers fantom5 CAGE-seq
5.5 years ago by elisheva ▴ 120
2
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6
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2.6k
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Retrive genomic sequences of genes of all ensembl organsims
sequence sequencing ensembl ftp gene
5.6 years ago by elisheva ▴ 120
0
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1
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2.6k
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Comment: C: Retrive gene sequences of all ensembl organsims
5.6 years ago by elisheva ▴ 120
0
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1
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2.6k
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Comment: C: Retrive gene sequences of all ensembl organsims
5.6 years ago by elisheva ▴ 120
2
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0
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813
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Extract the sequence of retrotransposons sites
genome retrotransposons ucsc
5.7 years ago by elisheva ▴ 120
0
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0
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47k
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Comment: C: What is P value and Padj value in DEGs ?
5.8 years ago by elisheva ▴ 120
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0
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1.4k
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Comment: C: HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
5.9 years ago by elisheva ▴ 120
0
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1
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1.7k
views
Comment: C: Convert regex into DNAString object
6.2 years ago by elisheva ▴ 120
2
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3
replies
1.7k
views
Convert regex into DNAString object
R bioconductor Biostrings
6.3 years ago by elisheva ▴ 120
2
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18
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4.4k
views
Help with finding introns
cDNA genome introns
updated 6.4 years ago by 20 • written 8.4 years ago by ▴ 120
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0
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2.7k
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Comment: C: Customising bedtools shuffle command
6.7 years ago by elisheva ▴ 120
5
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10
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5.7k
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Finding exons and introns sequences
genome sequence exon intron ensembl
updated 7.0 years ago by ★ 3.9k • written 7.0 years ago by ▴ 120
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0
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5.7k
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Comment: C: Finding exons and introns sequences
7.0 years ago by elisheva ▴ 120
0
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1
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5.7k
views
Comment: C: Finding exons and introns sequences
7.0 years ago by elisheva ▴ 120
0
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1
reply
5.7k
views
Comment: C: finding exons and introns sequences
7.0 years ago by elisheva ▴ 120
0
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1
reply
5.7k
views
Comment: C: finding exons and introns sequences
7.0 years ago by elisheva ▴ 120
0
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12
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3.1k
views
bedtools intersect issue
bed bedtools
updated 2.6 years ago by 45k • written 7.2 years ago by ▴ 120
0
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1
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3.1k
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Comment: C: bedtools intersect issue
7.2 years ago by elisheva ▴ 120
0
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1
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3.1k
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Comment: C: bedtools intersect issue
7.2 years ago by elisheva ▴ 120
0
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1
reply
3.1k
views
Comment: C: bedtools intersect issue
7.2 years ago by elisheva ▴ 120
0
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1
reply
3.1k
views
Comment: C: bedtools intersect issue
7.2 years ago by elisheva ▴ 120
0
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1
reply
4.2k
views
Comment: C: deepTools plot profile problem
7.4 years ago by elisheva ▴ 120
6
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4
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4.2k
views
deepTools plot profile problem
deepTools
updated 2.6 years ago by 45k • written 7.4 years ago by ▴ 120
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1
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2.3k
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Comment: C: Plotting average profiles
7.5 years ago by elisheva ▴ 120
4
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3
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2.3k
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Plotting average profiles
R Bioconductor
7.5 years ago by elisheva ▴ 120
4
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9
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3.2k
views
The efficient way to generate fasta and bed files
python fasta bed
7.6 years ago by elisheva ▴ 120
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2
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3.2k
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Comment: C: The efficient way to generate fasta and bed files
7.6 years ago by elisheva ▴ 120
2
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2
replies
4.9k
views
Scatterplot with hexbin
R Plot hexbin
updated 7.8 years ago by 11k • written 7.8 years ago by ▴ 120
1
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2
replies
1.9k
views
Problem with loacting gtf file
gtf ucsc gene
updated 7.9 years ago by 154k • written 7.9 years ago by ▴ 120
0
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1
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3.0k
views
Comment: C: Getting 3D model
8.0 years ago by elisheva ▴ 120
127 results • Page 1 of 3
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