Question: deepTools plot profile problem
0
gravatar for elisheva
23 months ago by
elisheva100
Israel
elisheva100 wrote:

Hi everyone!
I hope that someone who familiar with deepTools could help me.
I've got into a problem while trying to plot profile using deepTools plotProfile option.
I tried to add a title to the graph by the following command: --plotTitle "Damage distribution" but still get the title 'Genes' above it. This is the obtained pic: plot

These are my commands:

computeMatrix scale-regions -S first.bw second.bw -R exons.bed --regionBodyLength 140 -o matrix.mat.gz
plotProfile -m matrix.mat.gz -out Exons.png --perGroup --startLabel "Start" --endLabel "140b" --colors 
'#DAA521''#006401' --plotTitle "Damage distribution" --samplesLabel transcribed nonTranscribed
profile title deeptools • 1.1k views
ADD COMMENTlink modified 23 months ago by Devon Ryan95k • written 23 months ago by elisheva100
4
gravatar for EagleEye
23 months ago by
EagleEye6.6k
Sweden
EagleEye6.6k wrote:

What happens If you provide this parameter just with SPACE in double quotes for plotProfile,

--regionsLabel " "
ADD COMMENTlink modified 23 months ago • written 23 months ago by EagleEye6.6k
2
gravatar for Devon Ryan
23 months ago by
Devon Ryan95k
Freiburg, Germany
Devon Ryan95k wrote:

Your sample label is "genes" because you used --perGroup. Try adding --regionsLabel " "

ADD COMMENTlink written 23 months ago by Devon Ryan95k

Thanks to you and @EagleEye, it worked!!

ADD REPLYlink written 23 months ago by elisheva100

Hello elisheva,

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
Upvote|Bookmark|Accept

ADD REPLYlink written 23 months ago by genomax83k
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