Using DANPOS2 to determine nucleosome positions
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16 months ago
elisheva ▴ 120

Hi everyone. I want to determine the nucleosome positions from ENCODE data (ENCFF000VME).
The file is a signal file in Bigwig format - so there is no way to find the positions by just looking at the file.
I found that some people use the DANPOS2 in order to find the nucleosome positions from MNase-seq data.
However it's still unclear to me which option to use given the Bigwig format and how, and also how to verify the results.

MNase-seq DANPOS ENCODE bigwig • 391 views
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