User: Raheleh

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Raheleh120
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Posts by Raheleh

<prev • 62 results • page 1 of 7 • next >
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Comment: C: How to add Hazard ratio value into Kaplan Meier plot?
... Thank you cpad. I want to have risk table as well. I already tried to do it by annotate function. However, when I use annotate, risk table goes. Do you know how to keep risk table and HR together? Thank you! ...
written 5 days ago by Raheleh120
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How to add Hazard ratio value into Kaplan Meier plot?
... Hi, I plot the KM for my data. This is the script: ggsurvplot(survfit(recsurv~T1_signature, data = MSKCC), size = 1, palette = c("#E7B800", "#2E9FDF"), conf.int = FALSE, pval = TRUE, risk.table = TRUE, risk.table ...
ggsurvplot R hazard ratio kaplan meier written 6 days ago by Raheleh120
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Comment: C: Problem with UpSetR result
... Thanks, but I got this error: > Error in `[.default`(data, sets) : invalid subscript type 'list' ...
written 6 days ago by Raheleh120
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Problem with UpSetR result
... Hello, I have a dataframe with 3 variable and 56 observations which are just 1 and 0. Instead of venn diagram I am useing UpsetR package to find the intersections between variables. This is the [link][1]. This is my script: dat <- read.delim("dat.csv", sep = ",", stringsAsFactors = FALSE) ...
intersections upsetr upset written 6 days ago by Raheleh120 • updated 6 days ago by russhh4.9k
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Comment: C: How to plot GSEA result?
... Many thanks @gabrit. I did it. I am trying to add title for my plot. Do you know how I can do it? ...
written 21 days ago by Raheleh120
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How to plot GSEA result?
... Hello there, I did standard GSEA for my microarray expression data. As I found out GSEA tools provide GSEA plot just for top 20 of enriched pathways. How can I provide plot for other pathways which are also significantly enriched (adj-pval < 0.05) in my dataset based on GSEA? I am trying *fgsea ...
fgsea gsea plot plotenrichment R written 22 days ago by Raheleh120 • updated 21 days ago by Barry Digby230
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Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
... Thank you Kevin for your prompt reply. But the problem is still there. ...
written 8 weeks ago by Raheleh120
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Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
... Many thanks Kevin for this great tutorial. I went through all the step (just for up-regulated genes) and the image that I got at the end is like this. Why at the bottom of the right side there are some muddled text. How can I remove them? I tried but I couldn't. I really appreciate your time and he ...
written 8 weeks ago by Raheleh120
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Comment: C: How to identify best predictors in lasso-penalised model?
... Thank you for your reply. But, I got confused. You say " ***a greater positive value means a stronger positive influence**.*" If I'm not mistaken you mean a gene with a greater positive value of coefficient (for example in my case, FLNA and SLC2A3 and MAP7D2 respectively in relapse data) is a bette ...
written 11 weeks ago by Raheleh120
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Comment: C: How to identify best predictors in lasso-penalised model?
... Many thanks Jean-Karim for your explanation. I still couldn't understand the meaning of those **dots** . could you please explain more? I am looking for the best predictor genes which can predict patients at risk of relapse. Based on the result that I got above, which genes are the best predictors? ...
written 12 weeks ago by Raheleh120

Latest awards to Raheleh

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Why some probes have "NA" for gene symbol and Entrez ID?
Supporter 3 months ago, voted at least 25 times.
Popular Question 9 months ago, created a question with more than 1,000 views. For Why some probes have "NA" for gene symbol and Entrez ID?
Student 13 months ago, asked a question with at least 3 up-votes. For Why some probes have "NA" for gene symbol and Entrez ID?
Popular Question 23 months ago, created a question with more than 1,000 views. For Why some probes have "NA" for gene symbol and Entrez ID?

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