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Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
10 months ago by Raheleh ▴ 230
0
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0
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428
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Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
10 months ago by Raheleh ▴ 230
0
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4
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428
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How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
Batch correction DESeq2 RNAseq
updated 10 months ago by 6.5k • written 10 months ago by ▴ 230
0
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1
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3.1k
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Comment: Comment: TMM-Normalization
15 months ago by Raheleh ▴ 230
4
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8
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1.3k
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how to get ride of duplicated genes when we also have duplicated Ensemble ID in the expression profile?
RNA-Seq duplicated ENSEMBLE ID collapseRows
updated 15 months ago by ▴ 40 • written 2.4 years ago by ▴ 230
1
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1
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393
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problem with contrastive principal component analysis (cPCA)
scPCA cPCA
updated 20 months ago by 68k • written 20 months ago by ▴ 230
0
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0
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638
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How RNAseq input file for ssGSAE should be normalized?
VST ssGSEA normalization
19 months ago by Raheleh ▴ 230
1
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0
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475
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Why the result of GSEA and ssGSEA is different?
ssgsea gsea
23 months ago by Raheleh ▴ 230
0
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0
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468
views
How to do differential CNA analysis?
CNA GISTIC Differential analysis
23 months ago by Raheleh ▴ 230
0
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0
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1.6k
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Comment: C: Copy number differences between groups
23 months ago by Raheleh ▴ 230
0
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0
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428
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Normalizing multiple conditons all together
RMA microarray time series
2.2 years ago by Raheleh ▴ 230
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0
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5.7k
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Answer: A: COnverting mouse gene ID to Human gene ID
2.3 years ago by Raheleh ▴ 230
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1
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27k
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Comment: C: PCA in a RNA seq analysis
2.3 years ago by Raheleh ▴ 230
0
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1
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1.0k
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Comment: C: Finding a gene signature among multiple group
2.3 years ago by Raheleh ▴ 230
0
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1
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1.0k
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Comment: C: Finding a gene signature among multiple group
2.3 years ago by Raheleh ▴ 230
0
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0
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1.0k
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Comment: C: Finding a gene signature among multiple group
2.4 years ago by Raheleh ▴ 230
3
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7
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1.0k
views
Finding a gene signature among multiple group
SAM RNAseq signature
updated 9 weeks ago by ★ 1.1k • written 2.4 years ago by ▴ 230
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0
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1.8k
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Comment: C: Methods for contrasting gene expression profiles between multiple groups
2.4 years ago by Raheleh ▴ 230
0
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0
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1.0k
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Comment: C: Finding a gene signature among multiple group
2.4 years ago by Raheleh ▴ 230
0
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1
reply
1.3k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
2.4 years ago by Raheleh ▴ 230
0
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1
reply
1.3k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
2.4 years ago by Raheleh ▴ 230
0
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0
replies
1.3k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
2.4 years ago by Raheleh ▴ 230
0
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1
reply
821
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Comment: C: Batch correction using DESeq2
2.6 years ago by Raheleh ▴ 230
5
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9
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821
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Batch correction using DESeq2
RNA-Seq deseq2 batch vst
2.6 years ago by Raheleh ▴ 230
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1
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821
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Comment: C: Batch correction for one condition in DESeq2
2.6 years ago by Raheleh ▴ 230
1
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1
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16k
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Comment: C: Batch correction in DESeq2
2.6 years ago by Raheleh ▴ 230
0
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1
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821
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Comment: C: Batch correction for one condition in DESeq2
2.6 years ago by Raheleh ▴ 230
0
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0
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821
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Comment: C: Batch correction for one condition in DESeq2
2.6 years ago by Raheleh ▴ 230
0
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0
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9.2k
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Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
2.6 years ago by Raheleh ▴ 230
0
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0
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27k
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Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
2.6 years ago by Raheleh ▴ 230
0
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0
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27k
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Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
2.6 years ago by Raheleh ▴ 230
0
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0
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27k
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Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
2.6 years ago by Raheleh ▴ 230
0
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0
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3.7k
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Comment: C: Gene expression data set scaling
2.7 years ago by Raheleh ▴ 230
0
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1
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811
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Why some genes with negative fold change are assigned as activated upstream regulators by IPA?
IPA Upstream regulator activation z-score
2.8 years ago by Raheleh ▴ 230
0
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1
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4.5k
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Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
2.8 years ago by Raheleh ▴ 230
24
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16
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4.5k
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Only doing log2 transformation for RNAseq read count data without normalizing by DESeq2 ??!
RNA-Seq readcount deseq2 log2
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 230
0
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1
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4.5k
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Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 2.8 years ago by 37k • written 2.8 years ago by ▴ 230
0
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2
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4.5k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 2.8 years ago by 37k • written 2.8 years ago by ▴ 230
0
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0
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1.4k
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Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
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1
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1.6k
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Comment: C: Why Wilcox.test keep giving (p-val = 0.1) even when there is significant differe
3.0 years ago by Raheleh ▴ 230
10
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6
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1.6k
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Why Wilcox.test keep giving (p-val = 0.1) even when there is significant difference between the data?
wilcox.test ssGSEA significant level ggplot
updated 3.0 years ago by ▴ 280 • written 3.0 years ago by ▴ 230
0
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1
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1.4k
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Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
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1
reply
1.4k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
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1
reply
1.4k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
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1
reply
1.4k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
votes
1
reply
1.4k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
0
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1
reply
1.4k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
3.0 years ago by Raheleh ▴ 230
2
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14
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1.4k
views
how to plot lollipop in which dots show mean/median for each variable?
lollipop plot ggplot2
updated 3.0 years ago by 9.5k • written 3.0 years ago by ▴ 230
1
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3
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1.9k
views
What should be reported as Hazard Ratio in Kaplan Meier curve?
survival Hazard Ratio kaplan meier
updated 3.0 years ago by ▴ 10 • written 3.0 years ago by ▴ 230
0
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1
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4.3k
views
Comment: A: RIP-Seq data analysis
3.0 years ago by Raheleh ▴ 230
115 results • Page 1 of 3
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