User: Bioinfonext

gravatar for Bioinfonext
Bioinfonext220
Reputation:
220
Status:
Trusted
Location:
Korea
Last seen:
2 weeks, 1 day ago
Joined:
3 years, 8 months ago
Email:
n*********@gmail.com

Posts by Bioinfonext

<prev • 393 results • page 1 of 40 • next >
0
votes
0
answers
122
views
0
answers
Comment: C: how to filter microbial genome based on quality score
... Thanks @genomax, now it is working well without -hmm flag. ...
written 26 days ago by Bioinfonext220
0
votes
0
answers
122
views
0
answers
Comment: C: how to filter microbial genome based on quality score
... I have downloaded the mcrobial genome using repophlan_get_microbes.py script (https://bitbucket.org/nsegata/repophlan/src/default/). now I am trying to get the quality score for downloaded genome using the screen.py but I am getting an error? do I need to download any other tool? Could you please h ...
written 27 days ago by Bioinfonext220
0
votes
0
answers
122
views
0
answers
Comment: C: how to filter microbial genome based on quality score
... thanks genomax for quick help! In the ablove link publication they have mentioned that " A total of 71,782 microbial genomes were downloaded using RepoPhlan (https://bitbucket.org/nsegata/repophlan) on 14 June 2016, of which 5,503 were viral and 66,279 were bacterial or archaeal. On the basis of pr ...
written 6 weeks ago by Bioinfonext220
1
vote
0
answers
122
views
0
answers
how to filter microbial genome based on quality score
... I have downloaded the microbial genome using the repophlan_get_microbes.py. and got four folder: faa ffn fna frn With in the fna folder I got the files like this: G001284865.fna.bz2 G002910165.fna.bz2 G009390615.fna.bz2 G001284885.fna.bz2 G002910195.fna.bz2 G0093 ...
metagenomics repophlan written 6 weeks ago by Bioinfonext220
0
votes
0
answers
127
views
0
answers
GOSeq gene ontology enrichment analysis in rice
... I need your help for Goseq R code for gene ontology enrichment analysis for differentially expressed gene identified by DESeq2. I got the differentially expressed genes and I can also download the mapping file from biomart for all the rice gene ID like below: Gene stableID Transcript stable ...
R goseq written 9 weeks ago by Bioinfonext220
0
votes
1
answer
103
views
1
answers
Comment: C: how to write all pair end file name in a tab delimited format
... thanks work perfectly! ...
written 3 months ago by Bioinfonext220
2
votes
1
answer
103
views
1
answer
how to write all pair end file name in a tab delimited format
... I do have pair-end file name like this, could you please share a command that can write all the file name in a tab-delimited format like shown below: Leaf_T1_F_R10_S1_unmapped.R1.fq Leaf_T1_F_R10_S1_unmapped.R2.fq Leaf_T1_F_R2_S5_unmapped.R1.fq Leaf_T1_F_R2_S5_unmapped.R2.fq Lea ...
linux unix bash written 3 months ago by Bioinfonext220 • updated 3 months ago by ATpoint36k
0
votes
0
answers
187
views
0
answers
Comment: C: PCoA plot with phyla abundance
... Yes, I do have relative abundance table and metadata file but not sure how should I proceed after this, could you please share the R code for ggbiplot. ...
written 3 months ago by Bioinfonext220
1
vote
1
answer
117
views
1
answers
Comment: C: extract count data for a gene ID list in R
... By mistake I post wrong code ....so I changed it. Yes above code work for me. ...
written 3 months ago by Bioinfonext220
0
votes
1
answer
117
views
1
answers
Comment: C: extract count data for a gene ID list in R
... Many thanks, I have updated the correct code, why we need to use quote= FALSE? ...
written 3 months ago by Bioinfonext220

Latest awards to Bioinfonext

Popular Question 6 weeks ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 8 weeks ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 9 weeks ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Scholar 3 months ago, created an answer that has been accepted. For C: Vegan beta diversity and permutation analysis
Popular Question 3 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 3 months ago, created a question with more than 1,000 views. For How to get GFF file in genome guided assembly using StringTie
Epic Question 4 months ago, created a question with more than 10,000 views. For Find number of rows contain zero raw count across all sample (column) using R
Popular Question 4 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 5 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 6 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 7 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 9 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 10 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Great Question 10 months ago, created a question with more than 5,000 views. For Find number of rows contain zero raw count across all sample (column) using R
Popular Question 11 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 11 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Scholar 12 months ago, created an answer that has been accepted. For C: Vegan beta diversity and permutation analysis
Popular Question 12 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Great Question 13 months ago, created a question with more than 5,000 views. For How to extract unmapped Paired end reads from BWA output sam file
Popular Question 13 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Great Question 13 months ago, created a question with more than 5,000 views. For how to extract pair end reads from bam file using samtool
Popular Question 13 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 13 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 14 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 15 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1394 users visited in the last hour