User: Bioinfonext

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Bioinfonext160
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Posts by Bioinfonext

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Comment: C: How to generate a combined read count txt file with header as file name
... thanks Lieven, your script works perfectly. Thanks Again bioinfonext ...
written 5 weeks ago by Bioinfonext160
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Comment: C: How to generate a combined read count txt file with header as file name
... Hi Pierre, I am having 60 read count txt file so should I keep adding all like you have shown with two files. Thanks Bioinfonext ...
written 5 weeks ago by Bioinfonext160
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Comment: C: How to generate a combined read count txt file with header as file name
... Hi genomax, I used HTSeq for read count and I am having like 60 read count txt files. Thanks Bioinfonext ...
written 5 weeks ago by Bioinfonext160
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How to generate a combined read count txt file with header as file name
... I do have multiple txt file for RNAseq read count, is it possible to generate a single txt file with the file name as column header; txt file having read count like this: so first column is same in all files. BGIOSGA000001 0 BGIOSGA000002 12 BGIOSGA000003 0 BGIOSGA000004 0 ...
R bash awk linux written 5 weeks ago by Bioinfonext160
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Comment: C: HOW TO remove all spaces except first space with semicolon
... thanks for your all help. this command works for me: cat final.taxonomy.txt | tr "\r" "\n" > final.taxonomy2.txt Thanks again Bioinfonext ...
written 6 weeks ago by Bioinfonext160
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Comment: C: HOW TO remove all spaces except first space with semicolon
... excel sheet look like this: ABYV02000002.1 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii DSM 2374 ABYV02000006.1 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevib ...
written 6 weeks ago by Bioinfonext160
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Comment: C: HOW TO remove all spaces except first space with semicolon
... When I save excel sheet to tab delimited format, it saved in a weird look and also inserted ^M character somehow: it do not save each line of excel in a separate line in tab delimited format. ABYV02000002.1 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteri ...
written 6 weeks ago by Bioinfonext160
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Comment: C: HOW TO remove all spaces except first space with semicolon
... thanks, I was trying to type the same command after Ram suggestion but it only gives first line as output: Is there any issue with my input file or for running this command to all over the lines needs to modify; ABYV02000002.1 Archaea;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobact ...
written 6 weeks ago by Bioinfonext160
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Comment: C: HOW TO remove all spaces except first space with semicolon
... thanks, But this also removed spaces between lines as well. perl -lane '{printf ((shift @F)." ");print join(";",@F) }' I do not want to remove spaces between lines. ...
written 6 weeks ago by Bioinfonext160
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5 follow
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HOW TO remove all spaces except first space with semicolon
... Hi, I need to generate a taxonomy txt file having semicolon between them instead of spaces, but it should have first spaces after gene ID. AJQY01000137.1 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus AJRA01000005.1 Bacteria Firmicutes Bacilli Lactob ...
bash linux written 6 weeks ago by Bioinfonext160

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