User: nabiyogesh

gravatar for nabiyogesh
nabiyogesh30
Reputation:
30
Status:
New User
Location:
Last seen:
an hour ago
Joined:
4 months ago
Email:
n*********@gmail.com

Posts by nabiyogesh

<prev • 115 results • page 1 of 12 • next >
0
votes
2
answers
3.2k
views
2
answers
Comment: C: How to extract the longest isoform from multi fasta file
... when I type above command one by one I also got this message: sort: multi-character tab ` '. Please share how did you resolve. I am not able to understand from above link ...
written 22 hours ago by nabiyogesh30
0
votes
2
answers
3.2k
views
2
answers
Comment: C: How to extract the longest isoform from multi fasta file
... when I type above command one by one I also got this message: sort: multi-character tab ` '. Please share how did you resolve. I am not able to understand from above link ...
written 22 hours ago by nabiyogesh30
0
votes
0
answers
70
views
0
answers
script to Extract longest isoform from stringTie assembly
... I have done genome guided assembly using StringTie. In the output fasta header contain: Isoform name and then gene name. I want extract longest sequence based on gene name. fasta file header: >STRG.3.1 gene=STRG.3 **TCTCATTATT** >STRG.3.2 gene=STRG.3 **TCTCATTATT**GTCTT Both isoforms be ...
rna-seq written 23 hours ago by nabiyogesh30
0
votes
1
answer
113
views
1
answers
Comment: C: Strand specific pair end sequencing
... still getting error [root@psgl software]# cd RSeQC-2.6.4/ [root@psgl RSeQC-2.6.4]# pip install bx bash: pip: command not found... [root@psgl RSeQC-2.6.4]# ...
written 1 day ago by nabiyogesh30
0
votes
1
answer
113
views
1
answers
Comment: C: Strand specific pair end sequencing
... we use this kit for library preparation: Ovation RNA-Seq Systems 1–16 for Model Organisms PART NOS. 0351 ARABIDOPSIS kit ...
written 2 days ago by nabiyogesh30
0
votes
1
answer
113
views
1
answers
Comment: C: Strand specific pair end sequencing
... Thanks, I getting error when running RSeQC script. please suggest why I am getting error: [root@psgl software]# /home/yog/software/RSeQC-2.6.4/scripts/infer_experiment.py Traceback (most recent call last): File "/home/yog/software/RSeQC-2.6.4/scripts/infer_experiment.py", line 49, in fro ...
written 2 days ago by nabiyogesh30
2
votes
1
answer
113
views
1
answer
Strand specific pair end sequencing
... I have a strand-specific pair-end Illumina sequencing data. I am not able to understand which option to use in the different software. For each library I have two files: R1 and R2 and I am not sure about forward strand and reverse strand. I have mapped these R1 and R2 fq files to genome. Please sug ...
rna-seq written 2 days ago by nabiyogesh30 • updated 2 days ago by h.mon4.8k
1
vote
0
answers
62
views
0
answers
How to compare CDS gff with genome guided assembled gff
... I am working on plant species transcriptome. Its draft genome is known. We want to identify some new transcripts in genome-guided assembly. I need your help to remove overlapping sequencing by comparing already reported CDS gff file with assembled transcript gff file using StringTie. Can we also r ...
rna-seq written 6 days ago by nabiyogesh30
0
votes
0
answers
69
views
0
answers
How to get GFF file in genome guided assembly using StringTie
... For genome guide assembly, I used the below command: /home/yog/software/stringtie-1.3.2.Linux_x86_64/stringtie -p 8 -G gene.gtf -o genome.gtf -m 500 -v mapped.sorted.bam genome gtf file generated, please suggest how I can get gff file also. Thanks ...
rna-seq written 6 days ago by nabiyogesh30
0
votes
1
answer
68
views
1
answers
Comment: C: long non-coding RNA in genome guided assembly
... Please suggest the tool that can remove non-coding RNA from gtf file. ...
written 7 days ago by nabiyogesh30

Latest awards to nabiyogesh

Centurion 13 days ago, created 100 posts.
Supporter 9 weeks ago, voted at least 25 times.
Rising Star 10 weeks ago, created 50 posts within first three months of joining.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 985 users visited in the last hour