User: Bioinfonext

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Bioinfonext250
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Korea
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Posts by Bioinfonext

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Comment: C: Error: protect(): protection stack overflow
... file.info(Rf.data.txt") size isdir mode mtime ctime Rf.data.txt 7951144 FALSE 644 2020-10-15 19:41:38 2020-10-15 19:41:38 atime uid gid uname grname ...
written 8 days ago by Bioinfonext250
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Comment: C: Error: protect(): protection stack overflow
... > gc() used (Mb) gc trigger (Mb) limit (Mb) max used (Mb) Ncells 267317 14.3 642811 34.4 NA 442668 23.7 Vcells 544293 4.2 8388608 64.0 32768 1770323 13.6 > sessionInfo() R version 3.6.0 (2019-04-26) ...
written 8 days ago by Bioinfonext250
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Comment: C: Error: protect(): protection stack overflow
... I also tried this; env R_MAX_VSIZE=700Gb R but still getting same error! ...
written 8 days ago by Bioinfonext250
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Comment: C: Error: protect(): protection stack overflow
... I am working on iMac R terminal and try to use below codes but not resolved the issue. Step 1: Open terminal, Step 2: cd ~ touch .Renviron open .Renviron Step 3: Save the following as the first line of .Renviron: R_MAX_VSIZE=100Gb Note: This limit inc ...
written 8 days ago by Bioinfonext250
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Error: protect(): protection stack overflow
... Hi, I am trying to do random forest analysis for microbiome data in R but I am getting below error , could you please suggest how I can resolve it? > set.seed(123) > #run random forest > physeq.DNA.Close_5_Filtered_Classify <- randomForest(response~., data = rf.data, ntree ...
R random forest written 8 days ago by Bioinfonext250
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Comment: C: volcano plot not showing genera name clearly
... thanks it is sorted by using xlim = c(-5, 8)). but this always generates the graph with p-value, how I can change it to FDR (padj) value. Many thanks, ...
written 14 days ago by Bioinfonext250
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volcano plot not showing genera name clearly
... Hi, I am trying to plot volcano plot with EnhancedVolcano but some of the genera names are not completely wrapped in the figure. code; res<- read.table("volcano.plot.txt", row.names=1,sep="\t", header=T, blank.lines.skip=F, check.names=F) pdf("genera.pdf", width=10, height=8) E ...
rnaseq R visulization written 15 days ago by Bioinfonext250 • updated 15 days ago by ATpoint40k
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Comment: C: how to run Jupyter script on Slurm HPC
... Now jupyter installed on server but still getting en error/ $ jupyter nbconvert --to notebook --execute mynotebook.ipynb [NbConvertApp] Converting notebook mynotebook.ipynb to notebook Traceback (most recent call last): File "/opt/apps/alces/jupyter/4.6.3/lib/python3.7/site-packag ...
written 29 days ago by Bioinfonext250
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Comment: C: how to speed up blastx run on slurm HPC
... thank you so much! now I understand it. ...
written 4 weeks ago by Bioinfonext250
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Comment: C: how to speed up blastx run on slurm HPC
... thanks genomax, so should I change the resources like this: #!/bin/bash #SBATCH --job-name=nr # Job name #SBATCH --mail-type=END,FAIL # Mail events (NONE, BEGIN, END, FAIL, ALL) #SBATCH --ntasks=40 # Number of MPI ranks #SBATCH --nodes=1 ...
written 4 weeks ago by Bioinfonext250

Latest awards to Bioinfonext

Great Question 19 days ago, created a question with more than 5,000 views. For how to extract pair end reads from bam file using samtool
Epic Question 6 weeks ago, created a question with more than 10,000 views. For Find number of rows contain zero raw count across all sample (column) using R
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Scholar 6 months ago, created an answer that has been accepted. For C: Vegan beta diversity and permutation analysis
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Popular Question 8 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 9 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
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Popular Question 12 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Great Question 13 months ago, created a question with more than 5,000 views. For Find number of rows contain zero raw count across all sample (column) using R
Popular Question 13 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 13 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Popular Question 14 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Scholar 15 months ago, created an answer that has been accepted. For C: Vegan beta diversity and permutation analysis
Popular Question 15 months ago, created a question with more than 1,000 views. For latest tool for genome guided assembly
Great Question 15 months ago, created a question with more than 5,000 views. For How to extract unmapped Paired end reads from BWA output sam file

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