User: kk.mahsa

gravatar for kk.mahsa
kk.mahsa110
Reputation:
110
Status:
Trusted
Location:
Last seen:
9 months, 2 weeks ago
Joined:
3 years, 9 months ago
Email:
k*******@yahoo.com

Posts by kk.mahsa

<prev • 57 results • page 1 of 6 • next >
0
votes
2
answers
200
views
2
answers
Comment: C: Official software repository
... Thanks, it was helpful ...
written 9 months ago by kk.mahsa110
6
votes
2
answers
200
views
2
answers
Official software repository
... Hi I submitted a paper in a journal and they want me "Please move the long supplementary tables to an official software repository" Someone can help me introduce some official software repository to deposition of my long supplementary tables? Thanks ...
snp software repository written 9 months ago by kk.mahsa110
0
votes
0
answers
175
views
0
answers
A practical workflow for microarray gene expression Meta analysis
... hi and happy new year i need a practical workflow for microarray gene expression Meta analysis specially using R codes. i do not find good guideline in Google and Biostars. Anybody can help me to find a good workflow? Thanks ...
meta analysis gene expression microarray written 9 months ago by kk.mahsa110
0
votes
0
answers
398
views
0
answers
Comment: C: extract sequences that its identifier has specific word
... ****** nothing ***** ...
written 19 months ago by kk.mahsa110
1
vote
0
answers
398
views
0
answers
(Closed) extract sequences that its identifier has specific word
... hi i have a file containing various RNAs, i want to extract sequences that its identifier has mRNA word. > xxxx, mRNA AAATTT > xxxx, ncRNA TTTAA > xxxx, mRNA ATAT my output must be as below > xxxx, mRNA AAATTT > xxxx, mRNA ATA ...
fasta written 19 months ago by kk.mahsa110
1
vote
0
answers
247
views
0
answers
(Closed) remove space between columns
... hi i have a vcf file containing 4 columns like below. NW_012.1 35 A G now i want remove space between columns and output will be as below NW_012.135AG how can do this? ...
snp awk written 21 months ago by kk.mahsa110
0
votes
0
answers
1.3k
views
0
answers
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
... hi everyone i have 4 fastq files (two lane correspond to one organism), after filtration of reads, FastQC tell me that total number of reads is 628748302, i mapped them to reference genome and merged resulted two bam file and then sorted it. Now when i run collectalignmentsummarymetrics of Picard t ...
reads picard bam fastqc written 22 months ago by kk.mahsa110
0
votes
1
answer
531
views
1
answers
Comment: C: how to get common variants between two species?
... thanks but this is not what i want ...
written 2.7 years ago by kk.mahsa110
0
votes
1
answer
531
views
1
answer
how to get common variants between two species?
... i have sequencing data for two species, that they are able to mate together. now i want to extract common variants between them. To do this, must i map two data set in one reference genome or there are other ways? thanks in advance ...
next-gen snp common variant written 2.7 years ago by kk.mahsa110 • updated 2.7 years ago by tiago2112871.2k
4
votes
1
answer
1.2k
views
1
answer
CNV detection using beakdancer and SVDetect
... hi i have whole genome of a mmalian in paired end aligned on reference genome using BWA. i used breakdancer to CNV detection but i do not know how interpret the results. where are CNVs in output?? also i used SVDetect cnv but it is hard to interpret too. manual of programs are not rich. anybody ...
svdetect breakdancer cnv written 2.9 years ago by kk.mahsa110 • updated 2.9 years ago by d-cameron2.2k

Latest awards to kk.mahsa

Great Question 19 months ago, created a question with more than 5,000 views. For how can i remove duplicated variants from vcf file?
Popular Question 19 months ago, created a question with more than 1,000 views. For how to combine two output of RepeatMasker?
Popular Question 19 months ago, created a question with more than 1,000 views. For bgzf_read error during samtools run
Popular Question 19 months ago, created a question with more than 1,000 views. For error when running MarkDuplicates
Popular Question 19 months ago, created a question with more than 1,000 views. For how can i remove duplicated variants from vcf file?
Popular Question 19 months ago, created a question with more than 1,000 views. For converting lowercase letters to uppercase letters in fasta file
Popular Question 20 months ago, created a question with more than 1,000 views. For how can i remove duplicated variants from vcf file?
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For how can i remove duplicated variants from vcf file?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For converting lowercase letters to uppercase letters in fasta file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2253 users visited in the last hour