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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
2.7 years ago by kk.mahsa ▴ 150
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2.4k
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
2.7 years ago by kk.mahsa ▴ 150
0
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5
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2.4k
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How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV VCF Genotype
updated 2.7 years ago by ★ 4.4k • written 2.7 years ago by ▴ 150
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0
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1.4k
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
2.7 years ago by kk.mahsa ▴ 150
0
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1
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1.4k
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
2.7 years ago by kk.mahsa ▴ 150
1
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4
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1.4k
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Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP GATK
2.7 years ago by kk.mahsa ▴ 150
0
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0
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931
views
Comment: Comment: f-index in treemix
2.8 years ago by kk.mahsa ▴ 150
0
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1
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931
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f-index in treemix
treemix introgression f-index
2.8 years ago by kk.mahsa ▴ 150
0
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0
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1.0k
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Comment: Comment: signature of selection
3.8 years ago by kk.mahsa ▴ 150
0
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2
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1.0k
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signature of selection
WGS
3.8 years ago by kk.mahsa ▴ 150
25
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15
replies
22k
views
7 follow
how can I remove duplicated variants from vcf file?
SNP vcf
updated 2.2 years ago by 45k • written 8.3 years ago by ▴ 150
0
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0
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640
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detection of signature selection using relative individuals
selection WGS
3.9 years ago by kk.mahsa ▴ 150
0
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0
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1.2k
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Comment: Comment: Counting the number of major and minor alleles
3.9 years ago by kk.mahsa ▴ 150
0
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2
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1.2k
views
Counting the number of major and minor alleles
VCF Allele SNP
3.9 years ago by kk.mahsa ▴ 150
0
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0
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1.5k
views
Comment: Comment: How to convert scaffold name to chromosome number in vcf file
4.0 years ago by kk.mahsa ▴ 150
3
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2
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1.5k
views
How to convert scaffold name to chromosome number in vcf file
VCF Scaffold Chromosome
4.0 years ago by kk.mahsa ▴ 150
0
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0
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590
views
PLINK map format spliiting by chromosome
Splitting mapfile PLINK
4.0 years ago by kk.mahsa ▴ 150
0
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0
replies
1.9k
views
Comment: Comment: Error:Could not open individual file
4.0 years ago by kk.mahsa ▴ 150
0
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1
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1.9k
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Comment: Comment: Error:Could not open individual file
4.0 years ago by kk.mahsa ▴ 150
0
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4
replies
1.9k
views
Error:Could not open individual file
Fst VCF vcftools
4.0 years ago by kk.mahsa ▴ 150
0
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0
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1.6k
views
Comment: Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
4.1 years ago by kk.mahsa ▴ 150
0
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0
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2.2k
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Comment: Comment: Speeding up HaplotypeCaller analysis
4.2 years ago by kk.mahsa ▴ 150
0
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1
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2.2k
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Comment: Comment: Speeding up HaplotypeCaller analysis
4.2 years ago by kk.mahsa ▴ 150
1
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5
replies
2.2k
views
Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 4.2 years ago by 166k • written 4.2 years ago by ▴ 150
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2
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3.3k
views
Comment: Comment: Use of GenotypeGVCFs in population genetic studies
4.2 years ago by kk.mahsa ▴ 150
1
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6
replies
3.3k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 4.2 years ago by ★ 1.2k • written 4.2 years ago by ▴ 150
0
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1
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1.3k
views
Comment: C: Annotation of probes using annotated genome
4.9 years ago by kk.mahsa ▴ 150
0
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3
replies
1.3k
views
Annotation of probes using annotated genome
microarray probes affymetrix annotation blastn
4.9 years ago by kk.mahsa ▴ 150
0
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0
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1.3k
views
Comment: C: Official software repository
5.9 years ago by kk.mahsa ▴ 150
6
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3
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1.3k
views
Official software repository
SNP software repository
5.9 years ago by kk.mahsa ▴ 150
0
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0
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913
views
A practical workflow for microarray gene expression Meta analysis
Meta analysis Microarray Gene expression
5.9 years ago by kk.mahsa ▴ 150
0
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2
replies
19k
views
Comment: C: converting fna format to fasta
updated 6.5 years ago by 45k • written 8.4 years ago by ▴ 150
2
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3
replies
2.5k
views
visualization of identified SSRs
SSR visualize
updated 6.6 years ago by 20 • written 8.0 years ago by ▴ 150
0
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1
reply
3.0k
views
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard FastQC BAM READs
7.0 years ago by kk.mahsa ▴ 150
0
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1
reply
1.5k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs Repetetive elements
updated 7.6 years ago by 20 • written 8.1 years ago by ▴ 150
0
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0
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1.6k
views
Comment: C: how to get common variants between two species?
7.8 years ago by kk.mahsa ▴ 150
1
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2
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1.6k
views
how to get common variants between two species?
SNP next-gen common variant
updated 7.8 years ago by ★ 1.5k • written 7.8 years ago by ▴ 150
4
votes
2
replies
2.6k
views
CNV detection using beakdancer and SVDetect
SVDetect breakdancer CNV
updated 7.9 years ago by ★ 3.0k • written 7.9 years ago by ▴ 150
0
votes
1
reply
4.3k
views
bgzf_read error during samtools run
software error samtools cnv-seq bgzf
updated 8.0 years ago by 105k • written 8.0 years ago by ▴ 150
2
votes
2
replies
4.0k
views
SRA submission problem
SRA Aspera connect NCBI
8.0 years ago by kk.mahsa ▴ 150
5
votes
1
reply
3.2k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA NCBI
updated 8.0 years ago by 45k • written 8.0 years ago by ▴ 150
4
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0
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3.2k
views
Comment: C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 8.0 years ago by 45k • written 8.0 years ago by ▴ 150
0
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0
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5.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
8.0 years ago by kk.mahsa ▴ 150
0
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1
reply
5.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
8.0 years ago by kk.mahsa ▴ 150
0
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1
reply
1.8k
views
Comment: A: dividing fastq file into 2 separate files
8.0 years ago by kk.mahsa ▴ 150
0
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0
replies
5.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
8.0 years ago by kk.mahsa ▴ 150
0
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1
reply
5.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
updated 8.0 years ago by 154k • written 8.0 years ago by ▴ 150
4
votes
7
replies
5.1k
views
combine two fastq file (paired end) to submit in NCBI
SRA fastq
updated 8.0 years ago by 154k • written 8.0 years ago by ▴ 150
0
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0
replies
5.9k
views
Comment: C: Convert repeat masked out file to bed file format
8.3 years ago by kk.mahsa ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: how to combine two output of RepeatMasker?
8.3 years ago by kk.mahsa ▴ 150
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