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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
2.0 years ago by kk.mahsa ▴ 150
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1.7k
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
2.0 years ago by kk.mahsa ▴ 150
0
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5
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1.7k
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How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV VCF Genotype
updated 2.0 years ago by ★ 4.2k • written 2.0 years ago by ▴ 150
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0
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1.1k
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
2.1 years ago by kk.mahsa ▴ 150
0
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1
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1.1k
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
2.1 years ago by kk.mahsa ▴ 150
1
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4
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1.1k
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Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP GATK
2.1 years ago by kk.mahsa ▴ 150
0
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0
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708
views
Comment: Comment: f-index in treemix
2.1 years ago by kk.mahsa ▴ 150
0
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1
reply
708
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f-index in treemix
treemix introgression f-index
2.1 years ago by kk.mahsa ▴ 150
0
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0
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781
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Comment: Comment: signature of selection
3.2 years ago by kk.mahsa ▴ 150
0
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2
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781
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signature of selection
WGS
3.2 years ago by kk.mahsa ▴ 150
25
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15
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21k
views
7 follow
how can I remove duplicated variants from vcf file?
SNP vcf
updated 19 months ago by 45k • written 7.6 years ago by ▴ 150
0
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0
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513
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detection of signature selection using relative individuals
selection WGS
3.3 years ago by kk.mahsa ▴ 150
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0
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1.0k
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Comment: Comment: Counting the number of major and minor alleles
3.3 years ago by kk.mahsa ▴ 150
0
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2
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1.0k
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Counting the number of major and minor alleles
VCF Allele SNP
3.3 years ago by kk.mahsa ▴ 150
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0
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1.2k
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Comment: Comment: How to convert scaffold name to chromosome number in vcf file
3.3 years ago by kk.mahsa ▴ 150
3
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2
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1.2k
views
How to convert scaffold name to chromosome number in vcf file
VCF Scaffold Chromosome
3.3 years ago by kk.mahsa ▴ 150
0
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0
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478
views
PLINK map format spliiting by chromosome
Splitting mapfile PLINK
3.4 years ago by kk.mahsa ▴ 150
0
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0
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1.5k
views
Comment: Comment: Error:Could not open individual file
3.4 years ago by kk.mahsa ▴ 150
0
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1
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1.5k
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Comment: Comment: Error:Could not open individual file
3.4 years ago by kk.mahsa ▴ 150
0
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4
replies
1.5k
views
Error:Could not open individual file
Fst VCF vcftools
3.4 years ago by kk.mahsa ▴ 150
0
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0
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1.3k
views
Comment: Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
3.4 years ago by kk.mahsa ▴ 150
0
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0
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1.7k
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Comment: Comment: Speeding up HaplotypeCaller analysis
3.5 years ago by kk.mahsa ▴ 150
0
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1
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1.7k
views
Comment: Comment: Speeding up HaplotypeCaller analysis
3.5 years ago by kk.mahsa ▴ 150
1
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5
replies
1.7k
views
Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 3.5 years ago by 165k • written 3.5 years ago by ▴ 150
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2
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2.5k
views
Comment: Comment: Use of GenotypeGVCFs in population genetic studies
3.5 years ago by kk.mahsa ▴ 150
1
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6
replies
2.5k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 3.5 years ago by ★ 1.2k • written 3.5 years ago by ▴ 150
0
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1
reply
1.1k
views
Comment: C: Annotation of probes using annotated genome
4.2 years ago by kk.mahsa ▴ 150
0
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3
replies
1.1k
views
Annotation of probes using annotated genome
microarray probes affymetrix annotation blastn
4.2 years ago by kk.mahsa ▴ 150
0
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0
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1.1k
views
Comment: C: Official software repository
5.2 years ago by kk.mahsa ▴ 150
6
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3
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1.1k
views
Official software repository
SNP software repository
5.2 years ago by kk.mahsa ▴ 150
0
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0
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757
views
A practical workflow for microarray gene expression Meta analysis
Meta analysis Microarray Gene expression
5.2 years ago by kk.mahsa ▴ 150
0
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2
replies
18k
views
Comment: C: converting fna format to fasta
updated 5.8 years ago by 45k • written 7.7 years ago by ▴ 150
2
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3
replies
2.1k
views
visualization of identified SSRs
SSR visualize
updated 5.9 years ago by 20 • written 7.3 years ago by ▴ 150
0
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1
reply
2.8k
views
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard FastQC BAM READs
6.3 years ago by kk.mahsa ▴ 150
0
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1
reply
1.3k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs Repetetive elements
updated 6.9 years ago by 20 • written 7.4 years ago by ▴ 150
0
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0
replies
1.3k
views
Comment: C: how to get common variants between two species?
7.2 years ago by kk.mahsa ▴ 150
1
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2
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1.3k
views
how to get common variants between two species?
SNP next-gen common variant
updated 7.2 years ago by ★ 1.5k • written 7.2 years ago by ▴ 150
4
votes
2
replies
2.4k
views
CNV detection using beakdancer and SVDetect
SVDetect breakdancer CNV
updated 7.3 years ago by ★ 2.9k • written 7.3 years ago by ▴ 150
0
votes
1
reply
4.1k
views
bgzf_read error during samtools run
software error samtools cnv-seq bgzf
updated 7.3 years ago by 105k • written 7.3 years ago by ▴ 150
2
votes
2
replies
3.7k
views
SRA submission problem
SRA Aspera connect NCBI
7.4 years ago by kk.mahsa ▴ 150
5
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1
reply
2.9k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA NCBI
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 150
4
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0
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2.9k
views
Comment: C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 150
0
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0
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4.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
7.4 years ago by kk.mahsa ▴ 150
0
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1
reply
4.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
7.4 years ago by kk.mahsa ▴ 150
0
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1
reply
1.6k
views
Comment: A: dividing fastq file into 2 separate files
7.4 years ago by kk.mahsa ▴ 150
0
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0
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4.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
7.4 years ago by kk.mahsa ▴ 150
0
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1
reply
4.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
updated 7.4 years ago by 149k • written 7.4 years ago by ▴ 150
4
votes
7
replies
4.6k
views
combine two fastq file (paired end) to submit in NCBI
SRA fastq
updated 7.4 years ago by 149k • written 7.4 years ago by ▴ 150
0
votes
0
replies
5.4k
views
Comment: C: Convert repeat masked out file to bed file format
7.6 years ago by kk.mahsa ▴ 150
0
votes
0
replies
3.1k
views
Comment: C: how to combine two output of RepeatMasker?
7.6 years ago by kk.mahsa ▴ 150
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