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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
10 weeks ago by kk.mahsa ▴ 140
0
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1
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494
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
10 weeks ago by kk.mahsa ▴ 140
0
votes
5
replies
494
views
How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV VCF Genotype
updated 10 weeks ago by ★ 3.0k • written 10 weeks ago by ▴ 140
0
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0
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470
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
3 months ago by kk.mahsa ▴ 140
0
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1
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470
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
3 months ago by kk.mahsa ▴ 140
1
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4
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470
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Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP GATK
3 months ago by kk.mahsa ▴ 140
0
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0
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271
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Comment: Comment: f-index in treemix
3 months ago by kk.mahsa ▴ 140
0
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1
reply
271
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f-index in treemix
treemix introgression f-index
3 months ago by kk.mahsa ▴ 140
0
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0
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413
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Comment: Comment: signature of selection
16 months ago by kk.mahsa ▴ 140
0
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2
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413
views
signature of selection
WGS
16 months ago by kk.mahsa ▴ 140
24
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14
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17k
views
6 follow
how can i remove duplicated variants from vcf file?
SNP vcf
updated 17 months ago by ▴ 10 • written 5.8 years ago by ▴ 140
0
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0
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259
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detection of signature selection using relative individuals
selection WGS
17 months ago by kk.mahsa ▴ 140
0
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0
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569
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Comment: Comment: Counting the number of major and minor alleles
17 months ago by kk.mahsa ▴ 140
0
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2
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569
views
Counting the number of major and minor alleles
VCF Allele SNP
17 months ago by kk.mahsa ▴ 140
0
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0
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613
views
Comment: Comment: How to convert scaffold name to chromosome number in vcf file
18 months ago by kk.mahsa ▴ 140
3
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2
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613
views
How to convert scaffold name to chromosome number in vcf file
VCF Scaffold Chromosome
18 months ago by kk.mahsa ▴ 140
0
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0
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275
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PLINK map format spliiting by chromosome
Splitting mapfile PLINK
19 months ago by kk.mahsa ▴ 140
0
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0
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728
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Comment: Comment: Error:Could not open individual file
19 months ago by kk.mahsa ▴ 140
0
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1
reply
728
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Comment: Comment: Error:Could not open individual file
19 months ago by kk.mahsa ▴ 140
0
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4
replies
728
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Error:Could not open individual file
Fst VCF vcftools
19 months ago by kk.mahsa ▴ 140
0
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0
replies
838
views
Comment: Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
19 months ago by kk.mahsa ▴ 140
0
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0
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952
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Comment: Comment: Speeding up HaplotypeCaller analysis
20 months ago by kk.mahsa ▴ 140
0
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1
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952
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Comment: Comment: Speeding up HaplotypeCaller analysis
20 months ago by kk.mahsa ▴ 140
1
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5
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952
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Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 20 months ago by 154k • written 20 months ago by ▴ 140
0
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2
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1.5k
views
Comment: Comment: Use of GenotypeGVCFs in population genetic studies
20 months ago by kk.mahsa ▴ 140
1
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6
replies
1.5k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 20 months ago by ★ 1.2k • written 20 months ago by ▴ 140
0
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1
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623
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Comment: C: Annotation of probes using annotated genome
2.4 years ago by kk.mahsa ▴ 140
0
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3
replies
623
views
Annotation of probes using annotated genome
microarray probes affymetrix annotation blastn
2.4 years ago by kk.mahsa ▴ 140
0
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0
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724
views
Comment: C: Official software repository
3.4 years ago by kk.mahsa ▴ 140
6
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3
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724
views
Official software repository
SNP software repository
3.4 years ago by kk.mahsa ▴ 140
0
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0
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539
views
A practical workflow for microarray gene expression Meta analysis
Meta analysis Microarray Gene expression
3.4 years ago by kk.mahsa ▴ 140
0
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2
replies
13k
views
Comment: C: converting fna format to fasta
updated 4.0 years ago by 39k • written 5.9 years ago by ▴ 140
2
votes
3
replies
1.5k
views
visualization of identified SSRs
SSR visualize
updated 4.1 years ago by 20 • written 5.5 years ago by ▴ 140
0
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1
reply
2.4k
views
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard FastQC BAM READs
4.5 years ago by kk.mahsa ▴ 140
0
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1
reply
1.1k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs Repetetive elements
updated 5.1 years ago by 20 • written 5.6 years ago by ▴ 140
0
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0
replies
935
views
Comment: C: how to get common variants between two species?
5.4 years ago by kk.mahsa ▴ 140
1
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2
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935
views
how to get common variants between two species?
SNP next-gen common variant
updated 5.4 years ago by ★ 1.4k • written 5.4 years ago by ▴ 140
4
votes
2
replies
1.8k
views
CNV detection using beakdancer and SVDetect
SVDetect breakdancer CNV
updated 5.5 years ago by ★ 2.8k • written 5.5 years ago by ▴ 140
0
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1
reply
3.0k
views
bgzf_read error during samtools run
software error samtools cnv-seq bgzf
updated 5.5 years ago by 103k • written 5.5 years ago by ▴ 140
2
votes
2
replies
3.0k
views
SRA submission problem
SRA Aspera connect NCBI
5.6 years ago by kk.mahsa ▴ 140
5
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1
reply
2.4k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA NCBI
updated 5.6 years ago by 39k • written 5.6 years ago by ▴ 140
4
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0
replies
2.4k
views
Comment: C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 5.6 years ago by 39k • written 5.6 years ago by ▴ 140
0
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0
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3.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
5.6 years ago by kk.mahsa ▴ 140
0
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1
reply
3.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
5.6 years ago by kk.mahsa ▴ 140
0
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1
reply
1.3k
views
Comment: A: dividing fastq file into 2 separate files
5.6 years ago by kk.mahsa ▴ 140
0
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0
replies
3.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
5.6 years ago by kk.mahsa ▴ 140
0
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1
reply
3.6k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
updated 5.6 years ago by 129k • written 5.6 years ago by ▴ 140
4
votes
7
replies
3.6k
views
combine two fastq file (paired end) to submit in NCBI
SRA fastq
updated 5.6 years ago by 129k • written 5.6 years ago by ▴ 140
0
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0
replies
4.5k
views
Comment: C: Convert repeat masked out file to bed file format
5.8 years ago by kk.mahsa ▴ 140
0
votes
0
replies
2.5k
views
Comment: C: how to combine two output of RepeatMasker?
5.8 years ago by kk.mahsa ▴ 140
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