Question: how to get common variants between two species?
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gravatar for kk.mahsa
21 months ago by
kk.mahsa100
kk.mahsa100 wrote:

i have sequencing data for two species, that they are able to mate together. now i want to extract common variants between them. To do this, must i map two data set in one reference genome or there are other ways?

thanks in advance

common variant snp next-gen • 408 views
ADD COMMENTlink modified 21 months ago by tiago2112871.1k • written 21 months ago by kk.mahsa100
0
gravatar for tiago211287
21 months ago by
tiago2112871.1k
USA
tiago2112871.1k wrote:

I've never done this, but I would try starting looking for the conserved synteny between them. There is a bunch of tools constructed for this purpose. After finding those conserved regions, you could analyze to find the variants. This question has been discussed also here and here.

ADD COMMENTlink written 21 months ago by tiago2112871.1k

thanks but this is not what i want

ADD REPLYlink written 21 months ago by kk.mahsa100
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