how to get common variants between two species?
1
0
Entering edit mode
6.9 years ago
kk.mahsa ▴ 150

i have sequencing data for two species, that they are able to mate together. now i want to extract common variants between them. To do this, must i map two data set in one reference genome or there are other ways?

thanks in advance

SNP next-gen common variant • 1.3k views
ADD COMMENT
1
Entering edit mode
6.9 years ago
tiago211287 ★ 1.5k

I've never done this, but I would try starting looking for the conserved synteny between them. There is a bunch of tools constructed for this purpose. After finding those conserved regions, you could analyze to find the variants. This question has been discussed also here and here.

ADD COMMENT
0
Entering edit mode

thanks but this is not what i want

ADD REPLY

Login before adding your answer.

Traffic: 2002 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6