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• Posting a large interactive table online, supplementary to a publication?
  I want to publish a transcriptome paper, along with interactive materials enabling readers to per...
• How long does getCDS takes to retrieve CDS tables from UCSC
  Hello! I am using a Bioconductor package called spliceR to identify any alternative splicing eve...
• Best Practices For Publication Of mRNA-Seq Data
  Unless I am mistaken, there does not appear to be a stable repository for archiving RNAseq data, ...
• Bioinformatics short paper journal resource [software/webapps/database]
  I wrote a short paper recently regarding a web application I developed, but had a hard time in fi...
• Where is the BigWig Supplementary Information?
  Hello all, In [this paper][1] which i believe to be the original publication regarding the BigWi...
• Split Reads vs Supplementary Reads
  Hi Guys, I am wondering what makes an alignment supplementary. I have read Samtools spec and co...
• Indexing the genome in hash tables
  Hello, I'm wondering how the designers of softwares such as GSNAP which create hash tables of th...
• FBAT-toolkit; Family-Based Association Tests
  Hi, I am using FBAT for association/linkage analyses with my NGS data. I have some data format pr...
• TCGA data: where to find the target area/basepairs coverage per sample
  In order to calculate the mutation rate per Mb for TCGA SKCM dataset, I am looking for the exact ...
• TCGA sample identifiers in BRCA copy number data? TCGA-G9-6371-01A-11D-1784-02_BC1NP2ACXX---TCGA-G9-6371-10A-01D-1784-02_BC1NP2ACXX---Segment.tsv
  I'm trying to derive the exact sample IDs from BRCA copy number data and match them up with the s...
• Unable to access the published software MetaRouter, any ideas? :c
    Hi there. So I was looking into this article about a software called "Metarouter": http://nar...
• How long it takes to run repeat masker on a full genome
  Hi, I am currently running a programs that requires a transposable elements annotation in GTF fo...