User: BAGeno

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BAGeno20
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Posts by BAGeno

<prev • 29 results • page 1 of 3 • next >
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Comment: C: Stable Ensemble Ids
... @Devon Ryan Can you please tell me alternate haplotype? I have searched it but found it confusing. ...
written 9 weeks ago by BAGeno20
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Comment: C: Stable Ensemble Ids
... Like in case of ABCB11 there are two ensemble ids ENSG00000073734 and ENSG00000276582. ...
written 9 weeks ago by BAGeno20
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Stable Ensembl Ids
... Hi, I want stable Ensembl ids of genes. I have used [Hyperlink Management System][1]. In output there are some genes which have more than one Ensembl ID. I want to ask that why genes have more than one Ensembl ID and which ID should be used for further processing? [1]: http://biodb.jp/ ...
gene ensembl written 9 weeks ago by BAGeno20 • updated 8 weeks ago by Emily_Ensembl14k
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Comment: C: VEP and Annovar Annotation
... I want two things First is annotation of whole genome. Second is to check pharmacogenomically important deleterious variants in whole genome so what do you think which one is most suitable for these tasks. ...
written 5 months ago by BAGeno20
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Comment: C: VEP and Annovar Annotation
... I am using these options --sift b, --polyphen b, --ccds, --hgvs, --symbol, --regulatory, --biotype ...
written 5 months ago by BAGeno20
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Comment: C: VEP and Annovar Annotation
... I am using standalone VEP ...
written 5 months ago by BAGeno20
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VEP and Annovar Annotation
... Hi, I am trying to figure out which tool VEP or Annovar, is most accurate in terms of SIFT and Polyphen annotation. I annotated my file with both Annovar and VEP. I got about 2386 SIFT deleterious variants and 1547 Polyphen deletrious from annovar. And from VEP I got 37323 SIFT deleterious and 26 ...
annovar vep written 5 months ago by BAGeno20
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Comment: C: Downloadable Pharmacogenomic Databases
... Can you post a link? I searched but did not find it ...
written 5 months ago by BAGeno20
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Comment: C: Vcftools gives error when extracting snps
... I tried it and it worked. Thanks ...
written 6 months ago by BAGeno20
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Comment: C: Vcftools gives error when extracting snps
... I took command from here. https://www.biostars.org/p/61371/ ...
written 6 months ago by BAGeno20

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