User: Optimist

gravatar for Optimist
Optimist90
Reputation:
90
Status:
Trusted
Location:
India
Last seen:
1 week, 1 day ago
Joined:
3 years, 6 months ago
Email:
c************@gmail.com

I am a highly-motivated researcher currently working in bacterial genomics and exploring deeper in Antimicrobial Resistance. 

My areas of specialization include medical microbiology, host-pathogen interactions, epidemiology and biostatistics with a focus on comparative genomics of clinically isolated drug resistant bacterial Pseudomonas.

Backed by strong foundations in molecular and microbiology, my skill set includes PCR, Pan and Core genome analysis, phageomics, phylogenetic analysis and biostatistics.

As an extrovert and an excellent team player equipped with efficient communication and leadership skills, I would like to collaborate in diverse and multidisciplinary teams working towards achieving the common goal of making advances in human disease treatment.
 

Posts by Optimist

<prev • 44 results • page 1 of 5 • next >
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Comment: C: What tool should I use for the identification of DNA transposons?
... I have used ISFinder. ...
written 4 months ago by Optimist90
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What tool should I use for the identification of DNA transposons?
... I want to identify transposons and presence of transposase proteins in my bacterial genome, but don't know exactly which tool has good performance, any suggestion? My genome is a complete genome with 4 mb size. Stay indoors and Keep safe Thanks in advance ...
genome transposons transposase bacterial written 4 months ago by Optimist90 • updated 4 months ago by lakhujanivijay5.1k
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Comment: C: Tools to generate Genetic Context in Bacterial Genomes
... Dear Micheal Dondrup, Please see the [image][1] for reference. Thank You [1]: http://www.scielo.br/img/revistas/aabc/v91s1//0001-3765-aabc-201820180762-f01.jpg ...
written 6 months ago by Optimist90
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Answer: A: How to download fasta files of a particular genus bacteria available in NCBI?
... Hi Sart!! I use the following workflow to download a large set of Bacterial genomes from NCBI. This helped me to even download 1000s of genomes. Execute this workflow stepwise: wget ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/assembly_summary_refseq.txt (download the complete list of ...
written 7 months ago by Optimist90 • updated 7 months ago by Istvan Albert ♦♦ 84k
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Comment: A: Unable to Visualize RGI results using JSON file upload
... RGI HEATMAP should help you solve this issue. usage: rgi heatmap [-h] -i INPUT [-cat {drug_class,resistance_mechanism,gene_family}] [-f] [-o OUTPUT] [-clus {samples,genes,both}] [-d {plain,fill,text}] [--debug] Creates a heatmap when given m ...
written 7 months ago by Optimist90
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Comment: C: Tools to generate Genetic Context in Bacterial Genomes
... Dear Emily, Thank You for the prompt response. I would like to make an image with the Genetic Context of particular region of a bacterial genome. I would like to know if there is a tool that can help me generate the image. [Link to reference image][1] [1]: http://www.scielo.br/img/revistas/aab ...
written 8 months ago by Optimist90
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Tools to generate Genetic Context in Bacterial Genomes
... Could someone help me with a tool to generate genetic context images between two or multiple genomes. Thanks in advance ...
genomic context synteny plot written 8 months ago by Optimist90 • updated 6 months ago by Joe17k
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Comment: C: High CDS Count in my assembled Genome using Nanopore reads (ONT) data
... There is no Illumina data available for the isolates under study. ...
written 11 months ago by Optimist90
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Comment: C: Nanopore only assembly errors
... Hi all, I have assembled multiple bacterial genomes sequenced using Oxford Nanopore Minion (FLO-MIN106 flowcell) sequencer. I have used Pomoxis, Unicycler assemblers to perform the genome assembly. Upon annotating the resultant fasta files of the genome assembly using RAST and PATRIC, I have obser ...
written 11 months ago by Optimist90
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High CDS Count in my assembled Genome using Nanopore reads (ONT) data
... Hi all, I have assembled multiple bacterial genomes sequenced using Oxford Nanopore Minion (FLO-MIN106 flowcell) sequencer. I have used Pomoxis, Unicycler assemblers to perform the genome assembly. Upon annotating the resultant fasta files of the genome assembly using RAST and PATRIC, I have obser ...
wgs high cds nanopore assembly written 11 months ago by Optimist90 • updated 11 months ago by h.mon30k

Latest awards to Optimist

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Finding of origin of replication in a bacterial Genome
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Intall local BLAST in Ubuntu
Popular Question 9 months ago, created a question with more than 1,000 views. For Finding of origin of replication in a bacterial Genome
Popular Question 12 months ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 14 months ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Supporter 14 months ago, voted at least 25 times.
Popular Question 18 months ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 22 months ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Autobiographer 3.0 years ago, has more than 80 characters in the information field of the user's profile.

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