User: Optimist
Optimist • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- India
- Last seen:
- 1 day, 2 hours ago
- Joined:
- 1 year, 4 months ago
- Email:
- c************@gmail.com
I am a highly-motivated researcher currently working in bacterial genomics and exploring wider in genomics and antibiotic resistance.
My areas of specialization include medical microbiology, host-pathogen interactions, epidemiology and biostatistics with a focus on comparative genomics of multi-drug resistant bacterial pathogens.
Backed by strong foundations in molecular and microbiology, my skill set includes PCR, Pan and Core genome analysis, phageomics, phylogenetic analysis and biostatistics.
As an extrovert and an excellent team player equipped with efficient communication and leadership skills, I would like to collaborate in diverse and multidisciplinary teams working towards achieving the common goal of making advances in human disease treatment.
My scientific pursuit is led by the principles of Empiricism, rationalism and scepticism.
Posts by Optimist
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C: pipelines for pan-genome analysis
... Hello Anbrinaakbar,
INPUT_all.faa is generated by BPGA upon successful execution of Option 1. INPUT PREPARATION FOR CLUSTERING.
This clusters all the genome sequences under study for all the downstream analysis.
You may have to re run the program using option 1.
regards
Optimist ...
written 18 days ago by
Optimist • 20
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... Hello All,
Greetings
Can someone please suggest books one must read to have a details understanding about bacterial genomics.
Thanks a lot
Regards
Optimist
...
written 5 months ago by
Optimist • 20
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... Hello All,
A warm Christmas & New Year greetings!!!
I have the gene annotations of Prophage regions in my study bacterial genome. I need help with the tools that can be used to represent my annotations pictorially. (for example I'm looking at a similar output ![prophage region][1]
Thanks a l ...
written 5 months ago by
Optimist • 20
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C: SNP Analysis of bacterial genomes
... Dear Toralmanvar,
Thanks for your inputs.
My aim is to detect SNPs between both the strains. I have fastQ, fasta files of both the sequences. Could help me out with the relevant tools n steps regarding SNP analysis.
I'm looking at getting an output where in I should be able to explain the the cha ...
written 6 months ago by
Optimist • 20
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C: SNP Analysis of bacterial genomes
... Both the study genomes belong to same species. They are two different strains belonging to same species.
Yes, there exist a reference genome in the NCBI database.
I would like to detect SNPs between these two genomes.
Thanks & regards
Optimist ...
written 6 months ago by
Optimist • 20
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6 follow
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... Dear All,
I need to analyse two acinetobacter genomes isolated from 2 different patients who were in the same ward on the same day. We found similar Antibiotic resistance profile in both the isolates.
We have done WGS & submitted the reads to genbank.
I need help with regards to the SNP anal ...
written 6 months ago by
Optimist • 20
• updated
6 months ago by
Cliff Beall • 450
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... Hello Sir,
My reference Genome is Pseudomonas aeruginosa PAO1.
How do I contact you sir? I need to discuss the issue and get things clarified directly from you.
Thanking you Sir ...
written 7 months ago by
Optimist • 20
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... Hello Puli Chandramouli Reddy,
I had downloaded a Bacterial genome from NCBI for genomic analysis. I has 192 contigs in it. So, if I have to map the various virulence factors and Resistance genes that are present in the genome, I need a complete genome without any missing sequences. So in order to g ...
written 7 months ago by
Optimist • 20
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... Hello all,
How to determine the complete genome from a set of 192 contigs. Which are the tools to be employed to acheive this?
I have a genome fasta file with 192 contigs.
thanks a lot ...
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... Hello All,
What are the tools available to find the GC content profile across the bacterial Genome of 4000 kb. ...
written 9 months ago by
Optimist • 20
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For Any 'Biostars' like forum exclusively for bacterial Genomics ?
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