User: Optimist

gravatar for Optimist
Optimist40
Reputation:
40
Status:
New User
Location:
India
Last seen:
5 days, 4 hours ago
Joined:
1 year, 10 months ago
Email:
c************@gmail.com

I am a highly-motivated researcher currently working in bacterial genomics and exploring wider in genomics and antibiotic resistance.
My areas of specialization include medical microbiology, host-pathogen interactions, epidemiology and biostatistics with a focus on comparative genomics of multi-drug resistant bacterial pathogens.
Backed by strong foundations in molecular and microbiology, my skill set includes PCR, Pan and Core genome analysis, phageomics, phylogenetic analysis and biostatistics.
As an extrovert and an excellent team player equipped with efficient communication and leadership skills, I would like to collaborate in diverse and multidisciplinary teams working towards achieving the common goal of making advances in human disease treatment.
My scientific pursuit is led by the principles of Empiricism, rationalism and scepticism.

Posts by Optimist

<prev • 28 results • page 1 of 3 • next >
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Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
... Thank You for the quick revert. I'll follow the link you have provided. Regards Optimist ...
written 3 months ago by Optimist40
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Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
... Hello Sej Modha, Thanks for the links you've provided. I'll read-up the protocols. I'm working on bacterial genome *Pseudomonas aeruginosa* PAO1. details regarding the assembly is added below for your perusal. RefSeq - NC_002516.2 INSDC - AE004091.2 Size (Mb) - 6.26 GC% - 66.6 Thanks & Re ...
written 3 months ago by Optimist40
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How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a nucleotide fasta file?
... Hello Biostar community I need your help and inputs in generating Protein Table file ( .ptt ) and RNA table file ( .rnt ) from an assembled bacterial genome. I have Fasta & genbank files of the same. Are there any tools that can generate .ptt & .rnt files using my .fna file as input. Any ...
fasta assembly ngs ptt rnt written 3 months ago by Optimist40
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Comment: C: pipelines for pan-genome analysis
... Hello Anbrinaakbar, INPUT_all.faa is generated by BPGA upon successful execution of Option 1. INPUT PREPARATION FOR CLUSTERING. This clusters all the genome sequences under study for all the downstream analysis. You may have to re run the program using option 1. regards Optimist ...
written 6 months ago by Optimist40
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(Closed) Books on Microbial Genomics
... Hello All, Greetings Can someone please suggest books one must read to have a details understanding about bacterial genomics. Thanks a lot Regards Optimist ...
bacterial genomics written 10 months ago by Optimist40
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Pictorial representation of gene cassettes
... Hello All, A warm Christmas & New Year greetings!!! I have the gene annotations of Prophage regions in my study bacterial genome. I need help with the tools that can be used to represent my annotations pictorially. (for example I'm looking at a similar output ![prophage region][1] Thanks a l ...
genomes data representation gene cassettes written 11 months ago by Optimist40
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Comment: C: SNP Analysis of bacterial genomes
... Dear Toralmanvar, Thanks for your inputs. My aim is to detect SNPs between both the strains. I have fastQ, fasta files of both the sequences. Could help me out with the relevant tools n steps regarding SNP analysis. I'm looking at getting an output where in I should be able to explain the the cha ...
written 12 months ago by Optimist40
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Comment: C: SNP Analysis of bacterial genomes
... Both the study genomes belong to same species. They are two different strains belonging to same species. Yes, there exist a reference genome in the NCBI database. I would like to detect SNPs between these two genomes. Thanks & regards Optimist ...
written 12 months ago by Optimist40
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SNP Analysis of bacterial genomes
... Dear All, I need to analyse two acinetobacter genomes isolated from 2 different patients who were in the same ward on the same day. We found similar Antibiotic resistance profile in both the isolates. We have done WGS & submitted the reads to genbank. I need help with regards to the SNP anal ...
bacteria snp genomics written 12 months ago by Optimist40 • updated 12 months ago by Cliff Beall450
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Comment: C: Determining a complete genome from contigs
... Hello Sir, My reference Genome is Pseudomonas aeruginosa PAO1. How do I contact you sir? I need to discuss the issue and get things clarified directly from you. Thanking you Sir ...
written 13 months ago by Optimist40

Latest awards to Optimist

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Popular Question 14 months ago, created a question with more than 1,000 views. For Any 'Biostars' like forum exclusively for bacterial Genomics ?
Autobiographer 16 months ago, has more than 80 characters in the information field of the user's profile.

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