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427
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Comment: C: Replace fasta Header witha a matching text
7 months ago by Optimist ▴ 170
4
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5
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427
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Replace fasta Header witha a matching text
awk seqkit grep
updated 7 months ago by 108k • written 7 months ago by ▴ 170
0
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0
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427
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Comment: C: Replace fasta Header witha a matching text
7 months ago by Optimist ▴ 170
0
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0
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14k
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Comment: C: Renaming fasta headers according to a matching name list
7 months ago by Optimist ▴ 170
0
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1
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14k
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Comment: A: Renaming fasta headers according to a matching name list
updated 7 months ago by 108k • written 7 months ago by ▴ 170
0
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0
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250
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Combine multiple CARD RGI outputs
CARD RGI
8 months ago by Optimist ▴ 170
0
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1
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494
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Comment: C: How to extract fasta headers that contains specific text and it's sequence
8 months ago by Optimist ▴ 170
2
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1
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494
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Answer: C: How to extract fasta headers that contains specific text and it's sequence
updated 8 months ago by 34k • written 8 months ago by ▴ 170
7
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11
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494
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How to extract fasta headers that contains specific text and it's sequence
barrnap 16srRNA fasta
updated 8 months ago by 10.0k • written 8 months ago by ▴ 170
0
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1
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494
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Comment: C: How to extract fasta headers that contains specific text and it's sequence
8 months ago by Optimist ▴ 170
0
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0
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494
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Comment: C: How to extract fasta headers that contains specific text and it's sequence
8 months ago by Optimist ▴ 170
0
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0
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215
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What reference to be used in snippy
snippy SNP
9 months ago by Optimist ▴ 170
0
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1
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549
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Comment: C: What is the best way to assemble Illumina paired end reads?
9 months ago by Optimist ▴ 170
0
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0
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549
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Comment: C: What is the best way to assemble Illumina paired end reads?
9 months ago by Optimist ▴ 170
3
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5
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549
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What is the best way to assemble Illumina paired end reads?
Illumina sequencing Assembly
9 months ago by Optimist ▴ 170
0
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0
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821
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Comment: A: NCBI PGAP yami file
10 months ago by Optimist ▴ 170
2
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0
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212
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Characterization of an Integron carrying antimicrobial resistance genes
integron Genomic Island Transposon
updated 6 months ago by • 0 • written 10 months ago by ▴ 170
0
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1
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1.0k
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Comment: C: Prokka Annotation or NCBI Annotation
11 months ago by Optimist ▴ 170
1
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0
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359
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Answer: A: Selection of Multiple Sequence Alignment Tool
11 months ago by Optimist ▴ 170
0
votes
1
reply
265
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Should we remove plasmid sequences for Whole genome Alignment
plasmids genome alignment
11 months ago by Optimist ▴ 170
0
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1
reply
1.0k
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Comment: C: Prokka Annotation or NCBI Annotation
11 months ago by Optimist ▴ 170
4
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7
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1.0k
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Prokka Annotation or NCBI Annotation
Prokka NCBI GenBank
updated 13 days ago by • 0 • written 11 months ago by ▴ 170
0
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0
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314
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Tools for Whole genome phylogeny
Phyogeny Bacterial Genomics
11 months ago by Optimist ▴ 170
0
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0
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235
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Comment: C: extract a DNA sequence based on header in multifasta file
11 months ago by Optimist ▴ 170
1
vote
2
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235
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extract a DNA sequence based on header in multifasta file
fasta sequence extraction
updated 12 months ago by 6.2k • written 12 months ago by ▴ 170
0
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1
reply
348
views
How to generate WGS Multiple sequence alignment file
Multiple Sequence Alignment
12 months ago by Optimist ▴ 170
3
votes
3
replies
452
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How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
NCBI Genome Assembly database download
updated 12 months ago by ★ 2.7k • written 12 months ago by ▴ 170
0
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0
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476
views
Error creating a new environment in Bioconda
Bioconda
12 months ago by Optimist ▴ 170
1
vote
1
reply
394
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Error install Phame using Bioconda
conda Phame Install
12 months ago by Optimist ▴ 170
0
votes
1
reply
377
views
Should we Ignore heterozygous SNPs while constructing SNP based phylogeny
SNP Phylogeny CSIPhylogent
updated 12 months ago by 20 • written 13 months ago by ▴ 170
3
votes
2
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460
views
Hybrid Assembly From Illumina and Ion Torrent Reads
Iontorrent Illumina Genome assembly
updated 13 months ago by ▴ 190 • written 13 months ago by ▴ 170
0
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0
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460
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Comment: C: Hybrid Assembly From Illumina and Ion Torrent Reads
13 months ago by Optimist ▴ 170
6
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8
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4.5k
views
SNP Analysis of bacterial genomes
SNP Genomics Bacteria
updated 15 months ago by 20 • written 3.9 years ago by ▴ 170
2
votes
6
replies
359
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What tool should I use for the identification of DNA transposons?
transposons bacterial genome transposase
updated 18 months ago by 5.5k • written 18 months ago by ▴ 170
0
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1
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359
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Comment: C: What tool should I use for the identification of DNA transposons?
18 months ago by Optimist ▴ 170
2
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6
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418
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Tools to generate Genetic Context in Bacterial Genomes
synteny plot genomic context
updated 21 months ago by 19k • written 22 months ago by ▴ 170
0
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0
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418
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Comment: C: Tools to generate Genetic Context in Bacterial Genomes
21 months ago by Optimist ▴ 170
1
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1
reply
646
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Answer: A: How to download fasta files of a particular genus bacteria available in NCBI?
updated 21 months ago by 90k • written 21 months ago by ▴ 170
0
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0
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583
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Comment: A: Unable to Visualize RGI results using JSON file upload
22 months ago by Optimist ▴ 170
0
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1
reply
418
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Comment: C: Tools to generate Genetic Context in Bacterial Genomes
22 months ago by Optimist ▴ 170
0
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0
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624
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Comment: C: High CDS Count in my assembled Genome using Nanopore reads (ONT) data
2.2 years ago by Optimist ▴ 170
4
votes
4
replies
624
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High CDS Count in my assembled Genome using Nanopore reads (ONT) data
High CDS WGS Nanopore Assembly
updated 2.2 years ago by 33k • written 2.2 years ago by ▴ 170
6
votes
4
replies
599
views
Download All The Bacterial Genomes of Pseudomonas aeruginosa From Ncbi
wgs ngs bacterial Genomics
updated 2.4 years ago by 19k • written 2.4 years ago by ▴ 170
3
votes
1
reply
412
views
Country wise list of bacterial genome sequences
Bacterial genome wgs ngs
updated 2.4 years ago by 108k • written 2.4 years ago by ▴ 170
0
votes
1
reply
816
views
SPAdes usge commandline
Assembly genome ion torrent
2.7 years ago by Optimist ▴ 170
2
votes
1
reply
1.1k
views
Has anyone used MeDuSa: a multi-draft based scaffolder
wgs Bacterial genomics ngs medusa
updated 2.7 years ago by 33k • written 2.7 years ago by ▴ 170
0
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1
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714
views
Comment: C: Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
2.7 years ago by Optimist ▴ 170
3
votes
3
replies
714
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Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
Assembly Plasmid WGS Ion torrent
updated 2.7 years ago by 10.0k • written 2.7 years ago by ▴ 170
0
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0
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2.5k
views
Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
3.2 years ago by Optimist ▴ 170
0
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0
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2.5k
views
Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
3.2 years ago by Optimist ▴ 170
73 results • Page 1 of 2
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