Question: What tool should I use for the identification of DNA transposons?
0
gravatar for Optimist
7 weeks ago by
Optimist90
India
Optimist90 wrote:

I want to identify transposons and presence of transposase proteins in my bacterial genome, but don't know exactly which tool has good performance, any suggestion?

My genome is a complete genome with 4 mb size.

Stay indoors and Keep safe

Thanks in advance

ADD COMMENTlink modified 7 weeks ago by lakhujanivijay5.0k • written 7 weeks ago by Optimist90

this is honestly not a very difficult question. Can I inform what you have tried (found) so far?

ADD REPLYlink written 7 weeks ago by lieven.sterck7.8k

I have used ISFinder.

ADD REPLYlink written 7 weeks ago by Optimist90

and? not working as expected (or providing results as expected)?

Should be an OK tool for what you want to do actually.

ADD REPLYlink written 7 weeks ago by lieven.sterck7.8k
0
gravatar for lakhujanivijay
7 weeks ago by
lakhujanivijay5.0k
India
lakhujanivijay5.0k wrote:

Try this tool

ADD COMMENTlink written 7 weeks ago by lakhujanivijay5.0k
1

ugh... not saying the tool is not useful but if in the intro it abusively uses the term homology (repeatedly) where it should be similarity , it quickly turns into a no-go for me ... :/ ,

unfortunate

ADD REPLYlink written 7 weeks ago by lieven.sterck7.8k
1

lieven.sterck +1 for that

ADD REPLYlink written 7 weeks ago by lakhujanivijay5.0k
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