User: landscape95

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landscape95130
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Posts by landscape95

<prev • 67 results • page 1 of 7 • next >
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Download Gene Expression Data from UCSC
... Hello everyone, I wonder is there any way to download the GTEx Gene gene expression data set with Chia-PET, human, hg19, tissue MCF7, target ESR1 of chr21:5020000-46700000 from UCSC (http://promoter.bx.psu.edu/hi-c/chiapet.php ). I have attempted and searched for it but I am just able to download a ...
ucsc written 20 days ago by landscape95130 • updated 17 days ago by jeff0
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Comment: C: Separate non-coding RNA from total RNA list
... Thank you, I've edited it! ...
written 21 days ago by landscape95130
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Separate non-coding RNA from total RNA list
... Hello everyone, I am now having a list of human RNA genes (from e.g. METABRIC https://www.synapse.org/#!Synapse:syn1688369/wiki/27311 or GEO) , are there any way to separate non-coding RNA from the total RNA gene list? Are there any references to refer? Your help is very much appreciated! ...
non-coding rna written 21 days ago by landscape95130 • updated 21 days ago by geek_y8.6k
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Single cell Drop-Seq question
... Hello everyone, I am reading about drop-seq in paper "**Single-cell RNA sequencing for the study of development, physiology and disease**", I don't understand why the authors say: "Drop-seq protocols typically aim to incorporate about one cell in every 20 drops, so that only one drop in 400 on avera ...
singlecell written 23 days ago by landscape95130 • updated 23 days ago by genomax51k
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Bedtools intersect with index
... Hello everyone, I wonder are there any ways that bedtools intersect can display index of the matched pairs. For example: **a.bed** chr1 10 20 chr1 30 40 chr1 50 80 **b.bed** chr1 12 15 chr1 16 19 chr1 22 27 chr1 31 37 **The results:** chr1 10 20 chr1 12 15 1 <- here is the index of the ...
bedtools written 5 weeks ago by landscape95130 • updated 5 weeks ago by Alex Reynolds24k
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Comment: C: Data preprocessing with background correction and normalization
... Hi @Kevin, thank you! I have updated the information above ...
written 3 months ago by landscape95130
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Comment: C: Data preprocessing with background correction and normalization
... Hi Matina, thank you, I have updated the information above. ...
written 3 months ago by landscape95130
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Comment: C: Data preprocessing with background correction and normalization
... Yes, it is a microarray expression dataset, I haven't log2 transformed my data. What's your opinion? ...
written 3 months ago by landscape95130
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Hi Tris, I wonder if is it still correct if we apply this method for other distributions beside normal distribution? ...
written 3 months ago by landscape95130
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Comment: C: Log2 vs Quantile normalization
... Yes, I am talking about RNAseq/microarray expression matrix. ...
written 3 months ago by landscape95130

Latest awards to landscape95

Supporter 20 days ago, voted at least 25 times.
Popular Question 6 months ago, created a question with more than 1,000 views. For Gene symbol convert to Entrez ID

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