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2
votes
7
replies
5.3k
views
7 follow
Downloading from GEO
GEO
updated 9 months ago by ★ 1.8k • written 6.2 years ago by ▴ 190
0
votes
0
replies
436
views
Comment: Comment: PRS with multiple panels of SNP weights
13 months ago by landscape95 ▴ 190
2
votes
2
replies
436
views
PRS with multiple panels of SNP weights
PRS
13 months ago by landscape95 ▴ 190
0
votes
0
replies
1.7k
views
MTG2 error forrtl: severe (174): SIGSEGV, segmentation fault occurred
MTG2
updated 3.3 years ago by 20 • written 4.6 years ago by ▴ 190
4
votes
1
reply
1.4k
views
Single cell Drop-Seq question
singlecell
updated 3.4 years ago by 20 • written 5.3 years ago by ▴ 190
5
votes
6
replies
5.8k
views
Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inflation factor for covariate 'COVAR1' is too high.
GWAS PLINK
updated 3.9 years ago by ▴ 10 • written 4.7 years ago by ▴ 190
0
votes
2
replies
851
views
Estimate the genomic relationship between Discovery and Target sample in PRS
GWAS PRS
updated 4.2 years ago by ★ 4.6k • written 4.2 years ago by ▴ 190
0
votes
1
reply
1.7k
views
Comment: C: Adjusting binary phenotype (case/ctrl) for Polygenic Risk Score (PRS)
4.2 years ago by landscape95 ▴ 190
1
vote
3
replies
1.7k
views
Adjusting binary phenotype (case/ctrl) for Polygenic Risk Score (PRS)
PRS
updated 4.2 years ago by ★ 4.6k • written 4.3 years ago by ▴ 190
0
votes
0
replies
1.7k
views
Comment: C: Infer pedigree from Kinship coefficients
4.4 years ago by landscape95 ▴ 190
2
votes
2
replies
1.7k
views
Infer pedigree from Kinship coefficients
GWAS Kinship
updated 4.4 years ago by ▴ 20 • written 4.5 years ago by ▴ 190
1
vote
1
reply
1.7k
views
PRSice PRS calculation warning Mismatched SNPs. Is it due to using multi-covariate for SNP effect size?
GWAS PRSice
updated 4.5 years ago by ★ 4.6k • written 4.7 years ago by ▴ 190
2
votes
1
reply
1.1k
views
PRSice threshold result is not as expected
GWAS PRSice
updated 4.5 years ago by ★ 4.6k • written 4.7 years ago by ▴ 190
0
votes
1
reply
1.4k
views
Missing lots of SNP while clumping
PRSice
4.6 years ago by landscape95 ▴ 190
0
votes
0
replies
1.5k
views
Comment: C: Get SNP information with association test with PLINK
4.6 years ago by landscape95 ▴ 190
0
votes
1
reply
1.5k
views
Comment: C: Get SNP information with association test with PLINK
4.6 years ago by landscape95 ▴ 190
4
votes
4
replies
1.5k
views
Get SNP information with association test with PLINK
GWAS Plink
updated 4.6 years ago by 11k • written 4.6 years ago by ▴ 190
0
votes
0
replies
5.8k
views
Comment: C: Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inf
4.6 years ago by landscape95 ▴ 190
0
votes
1
reply
5.8k
views
Comment: C: Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inf
4.7 years ago by landscape95 ▴ 190
0
votes
0
replies
1.1k
views
Using SSrGE for SNV calling
SSrGE SNV
4.7 years ago by landscape95 ▴ 190
0
votes
1
reply
721
views
Comment: C: Viewing large compressed genetic relationship matrix .grm file
4.7 years ago by landscape95 ▴ 190
0
votes
3
replies
721
views
Viewing large compressed genetic relationship matrix .grm file
GCTA
4.7 years ago by landscape95 ▴ 190
0
votes
0
replies
5.8k
views
Comment: C: Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inf
4.7 years ago by landscape95 ▴ 190
0
votes
0
replies
3.0k
views
Comment: C: Parallel in PLINK for linear association for SNP effects
4.7 years ago by landscape95 ▴ 190
3
votes
2
replies
3.0k
views
Parallel in PLINK for linear association for SNP effects
GWAS Plink
updated 4.7 years ago by 10k • written 4.7 years ago by ▴ 190
0
votes
1
reply
3.8k
views
Comment: C: Missing data in covariate file in PLINK
4.7 years ago by landscape95 ▴ 190
1
vote
3
replies
3.8k
views
Missing data in covariate file in PLINK
GWAS
updated 4.7 years ago by 4.1k • written 4.7 years ago by ▴ 190
0
votes
0
replies
1.1k
views
GWAS Retrieve Target Sample from a whole set of samples and PRS in PRSice tool
GWAS Plink
4.7 years ago by landscape95 ▴ 190
0
votes
0
replies
2.2k
views
Comment: C: GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
4.7 years ago by landscape95 ▴ 190
1
vote
3
replies
2.2k
views
GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
GWAS plink
updated 4.7 years ago by 11k • written 4.7 years ago by ▴ 190
0
votes
0
replies
2.2k
views
Comment: C: GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
4.7 years ago by landscape95 ▴ 190
0
votes
0
replies
719
views
Selecting TargetScan datatype
data
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 190
0
votes
1
reply
1.1k
views
TargetScan search for miR-10b-5p
data
4.8 years ago by landscape95 ▴ 190
0
votes
0
replies
1.5k
views
Data for comparison between control and treat samples (cells or patients) by single-cell RNA-Seq
scRNA-Seq
4.9 years ago by landscape95 ▴ 190
2
votes
1
reply
2.0k
views
RNA-Seq data from Firebrowse TCGA
RNA-Seq
4.9 years ago by landscape95 ▴ 190
1
vote
3
replies
2.2k
views
Combine microarray and RNA-seq gene expression for differentially expression analysis
RNA-Seq microarray DEG
updated 18 months ago by ▴ 30 • written 5.0 years ago by ▴ 190
23
votes
14
replies
43k
views
7 follow
Gene symbol convert to Entrez ID
Entrez R biomart
updated 5.0 years ago by 11k • written 6.3 years ago by ▴ 190
1
vote
1
reply
1.0k
views
Biomart package listFilter function with with_mirbase vs other mir information
R biomart
updated 5.1 years ago by ★ 2.0k • written 5.1 years ago by ▴ 190
0
votes
2
replies
1.4k
views
Download Gene Expression Data from UCSC
UCSC
updated 5.2 years ago by • 0 • written 5.2 years ago by ▴ 190
3
votes
4
replies
1.0k
views
Separate non-coding RNA from total RNA list
non-coding RNA
updated 5.2 years ago by 12k • written 5.2 years ago by ▴ 190
0
votes
0
replies
1.0k
views
Comment: C: Separate non-coding RNA from total RNA list
5.2 years ago by landscape95 ▴ 190
1
vote
1
reply
1.2k
views
Bedtools intersect with index
bedtools
updated 5.3 years ago by 35k • written 5.3 years ago by ▴ 190
0
votes
0
replies
2.0k
views
Comment: C: Data preprocessing with background correction and normalization
5.5 years ago by landscape95 ▴ 190
0
votes
1
reply
2.0k
views
Comment: C: Data preprocessing with background correction and normalization
5.5 years ago by landscape95 ▴ 190
4
votes
7
replies
2.0k
views
Data preprocessing with background correction and normalization
RNA-Seq
5.5 years ago by landscape95 ▴ 190
0
votes
2
replies
2.0k
views
Comment: C: Data preprocessing with background correction and normalization
5.5 years ago by landscape95 ▴ 190
0
votes
0
replies
88k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
5.5 years ago by landscape95 ▴ 190
0
votes
0
replies
2.9k
views
Comment: C: Log2 vs Quantile normalization
5.5 years ago by landscape95 ▴ 190
0
votes
3
replies
2.9k
views
Log2 vs Quantile normalization
normalization
5.5 years ago by landscape95 ▴ 190
1
vote
1
reply
1.2k
views
Quality control of gene expression data
QC
updated 5.5 years ago by 86k • written 5.5 years ago by ▴ 190
97 results • Page 1 of 2
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