User: geocarvalho

gravatar for geocarvalho
geocarvalho110
Reputation:
110
Status:
Trusted
Location:
Brazil/Recife
Twitter:
@geovcnt
Last seen:
1 day, 8 hours ago
Joined:
2 years, 3 months ago
Email:
g************@gmail.com

Posts by geocarvalho

<prev • 26 results • page 1 of 3 • next >
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Answer: A: Where to download blacklisted regions?
... If someone wants the SV blacklist, the 10x genomics has a topic about [SV Calling Filter File](https://support.10xgenomics.com/genome-exome/software/pipelines/latest/advanced/references) ...
written 11 days ago by geocarvalho110
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
... Another option is [IMSindel](https://www.nature.com/articles/s41598-018-23978-z), that according to the paper has good performance when compared to others like Pindel. ...
written 8 weeks ago by geocarvalho110
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Comment: C: Identifying CNVs from targeted amplicon sequencing
... hahahah por nada! XD ...
written 3 months ago by geocarvalho110
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Comment: C: Identifying CNVs from targeted amplicon sequencing
... I didn't finish my benchmark, but I helped a friend to use it! ...
written 3 months ago by geocarvalho110
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
... Thanks, genomax. The 8 bp from index 1 were specific enough to recover than, so I just adjusted the sample sheet used. Best regards. ...
written 3 months ago by geocarvalho110
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
... Thank you guys! It was mixed with normal length indices (8 bases), and it was 12 bases on one side. The python algorithm should open the Undetermined FASTQ and search for the reads with the possible index in the header? ...
written 3 months ago by geocarvalho110
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
... I'm passing for a problem like this one, could you help me? my `RunInfo.xml`: ``` HGMJVAFXY NB500954 190219 1_11101 1_21101 1_11102 ... 4_11612 4_21612 ...
written 3 months ago by geocarvalho110
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Answer: A: Annotation tool for cnvKit
... Hello Naomi, other options that I know: * [StructuralVariantAnnotation](https://github.com/PapenfussLab/StructuralVariantAnnotation) * [AnnotSV](https://academic.oup.com/bioinformatics/article/34/20/3572/4970516) - [website](http://www.lbgi.fr/AnnotSV/) And if you want to take data from different ...
written 6 months ago by geocarvalho110
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Comment: C: how to fix error in getGEO function?
... h.mon LOL, I still thinking that you're a Jedi here! Any chance we can talk by email or chat? ...
written 10 months ago by geocarvalho110
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Comment: C: how to fix error in getGEO function?
... Hello Mr. h.mon, sorry for that but I noticed that you're from Brazil. And I would like to know about your projects here, could you please send me an email? I can't see your email on your account on biostars :/ Best regards! ...
written 10 months ago by geocarvalho110 • updated 10 months ago by h.mon25k

Latest awards to geocarvalho

Voter 3 months ago, voted more than 100 times.
Supporter 2.2 years ago, voted at least 25 times.

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