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2
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203k
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Answer: Answer: How to download raw sequence data from GEO/SRA
11 months ago by geocarvalho ▴ 400
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0
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5.2k
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Comment: Comment: How to run Picard docker image
12 months ago by geocarvalho ▴ 400
1
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2
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1.0k
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BAM to CRAM and BAM recover with smaller size
BAM samtools CRAM
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 400
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0
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14k
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Answer: Answer: bedGraphToBigWig Install error
2.2 years ago by geocarvalho ▴ 400
2
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1
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5.2k
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Answer: Answer: How to run Picard docker image
2.3 years ago by geocarvalho ▴ 400
1
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0
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10k
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Answer: Answer: filtering the reads based on the length
2.4 years ago by geocarvalho ▴ 400
0
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0
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11k
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Comment: Comment: filter reads in BAM having a tag
2.4 years ago by geocarvalho ▴ 400
3
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4.5k
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Comment: Comment: Paternity Testing from WGS Trio
2.4 years ago by geocarvalho ▴ 400
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0
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2.2k
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Answer: Answer: Removing multi-variant records from vcf file
2.4 years ago by geocarvalho ▴ 400
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0
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2.2k
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Answer: Answer: GATK4 ASEReadCounter Function of VCF
2.4 years ago by geocarvalho ▴ 400
0
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0
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100k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
2.5 years ago by geocarvalho ▴ 400
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0
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8.7k
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Answer: Answer: How to access specifically 30x NA12878 sequencing runs
18 months ago by geocarvalho ▴ 400
1
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2.1k
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Comment: Comment: Understanding bam tracks
3.1 years ago by geocarvalho ▴ 400
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1
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3.4k
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Comment: Comment: How to retrieve the SNP data from Bam file
3.7 years ago by geocarvalho ▴ 400
0
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1
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6.0k
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Comment: Comment: Copy Number Variation Tools
3.7 years ago by geocarvalho ▴ 400
4
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0
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9.9k
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Answer: Answer: snpEFF not able to download GRCH38 ?
4.0 years ago by geocarvalho ▴ 400
0
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1
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100k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
4.3 years ago by geocarvalho ▴ 400
0
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0
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908
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Comment: C: Variant not annotated by ANNOVAR in the main transcript
4.7 years ago by geocarvalho ▴ 400
0
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1
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908
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Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
4.7 years ago by geocarvalho ▴ 400
1
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0
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30k
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Answer: A: Where to download blacklisted regions?
5.3 years ago by geocarvalho ▴ 400
0
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1
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2.7k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
5.3 years ago by geocarvalho ▴ 400
6
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8
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2.7k
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 5.3 years ago by 8.3k • written 5.3 years ago by ▴ 400
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1
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2.7k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
5.3 years ago by geocarvalho ▴ 400
0
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0
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6.1k
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Comment: C: Using limma to find differentially methylated probes across clusters
5.4 years ago by geocarvalho ▴ 400
1
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0
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2.9k
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Answer: A: CNV and pseudogenes
5.4 years ago by geocarvalho ▴ 400
0
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0
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211k
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Comment: C: How To Update R In Ubuntu ?
5.6 years ago by geocarvalho ▴ 400
9
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1
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100k
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Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 5.8 years ago by 45k • written 8.0 years ago by ▴ 400
0
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0
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3.1k
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
6.5 years ago by geocarvalho ▴ 400
1
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0
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4.1k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
6.6 years ago by geocarvalho ▴ 400
0
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1
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4.1k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
6.6 years ago by geocarvalho ▴ 400
0
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0
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23k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.6 years ago by geocarvalho ▴ 400
0
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1
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23k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.6 years ago by geocarvalho ▴ 400
1
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2
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23k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.6 years ago by geocarvalho ▴ 400
0
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0
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2.0k
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Answer: A: Annotation tool for cnvKit
6.8 years ago by geocarvalho ▴ 400
0
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0
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3.5k
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Comment: C: how to fix error in getGEO function?
7.1 years ago by geocarvalho ▴ 400
0
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1
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3.5k
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Comment: C: how to fix error in getGEO function?
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 400
0
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0
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2.5k
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Answer: A: Bioinformatics workshop or training courses
7.1 years ago by geocarvalho ▴ 400
0
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0
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1.8k
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Answer: A: Large deletions in exome sequencing data
7.3 years ago by geocarvalho ▴ 400
2
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1
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4.1k
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Answer: A: Identifying CNVs from targeted amplicon sequencing
7.3 years ago by geocarvalho ▴ 400
0
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0
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3.5k
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Answer: A: Plotting common SNPs from four individual from a vcf file
7.6 years ago by geocarvalho ▴ 400
2
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0
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3.2k
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Answer: A: R books with Quantitative Genetics examples?
7.7 years ago by geocarvalho ▴ 400
1
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0
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1.9k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
7.7 years ago by geocarvalho ▴ 400
0
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0
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4.9k
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Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.8 years ago by geocarvalho ▴ 400
4
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0
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16k
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Answer: A: List all available databases for ANNOVAR
7.8 years ago by geocarvalho ▴ 400
2
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0
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4.9k
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Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.8 years ago by geocarvalho ▴ 400
0
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1
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2.9k
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Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
8.0 years ago by geocarvalho ▴ 400
1
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0
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2.2k
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Answer: A: Where can I find a sample analysis pipeline for DNA?
8.4 years ago by geocarvalho ▴ 400
1
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0
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2.5k
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Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
8.5 years ago by geocarvalho ▴ 400
0
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1
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2.1k
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Answer: A: Different reference and variant allele in IonTorrent variantCaller
8.5 years ago by geocarvalho ▴ 400
1
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0
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6.0k
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Answer: A: Copy Number Variation Tools
8.5 years ago by geocarvalho ▴ 400
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