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1
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0
replies
6.1k
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Answer:
Answer: filtering the reads based on the length
8 days ago by
geocarvalho
▴ 330
0
votes
0
replies
4.6k
views
Comment:
Comment: filter reads in BAM having a tag
13 days ago by
geocarvalho
▴ 330
1
vote
0
replies
2.5k
views
Comment:
Comment: Paternity Testing from WGS Trio
15 days ago by
geocarvalho
▴ 330
0
votes
0
replies
758
views
Answer:
Answer: Removing multi-variant records from vcf file
19 days ago by
geocarvalho
▴ 330
0
votes
0
replies
433
views
Answer:
Answer: GATK4 ASEReadCounter Function of VCF
19 days ago by
geocarvalho
▴ 330
0
votes
0
replies
77k
views
Comment:
Comment: Extract Sub-Set Of Regions From Vcf File
6 weeks ago by
geocarvalho
▴ 330
0
votes
0
replies
4.5k
views
Answer:
Answer: How to access specifically 30x NA12878 sequencing runs
6 months ago by
geocarvalho
▴ 330
1
vote
0
replies
890
views
Comment:
Comment: Understanding bam tracks
8 months ago by
geocarvalho
▴ 330
0
votes
1
reply
1.6k
views
Comment:
Comment: How to retrieve the SNP data from Bam file
16 months ago by
geocarvalho
▴ 330
0
votes
1
reply
4.2k
views
Comment:
Comment: Copy Number Variation Tools
16 months ago by
geocarvalho
▴ 330
3
votes
0
replies
6.3k
views
Answer:
Answer: snpEFF not able to download GRCH38 ?
20 months ago by
geocarvalho
▴ 330
0
votes
1
reply
77k
views
Comment:
Comment: Extract Sub-Set Of Regions From Vcf File
24 months ago by
geocarvalho
▴ 330
0
votes
0
replies
460
views
Comment:
C: Variant not annotated by ANNOVAR in the main transcript
2.4 years ago by
geocarvalho
▴ 330
0
votes
1
reply
460
views
Variant not annotated by ANNOVAR in the main transcript
Annovar
Variant
Annotation
Transcript
Exome
2.4 years ago by
geocarvalho
▴ 330
1
vote
0
replies
19k
views
Answer:
A: Where to download blacklisted regions?
2.9 years ago by
geocarvalho
▴ 330
0
votes
1
reply
1.1k
views
Comment:
C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.0 years ago by
geocarvalho
▴ 330
6
votes
8
replies
1.1k
views
Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R
methylation
humanmethylation450
limma
updated 3.0 years ago by
Charles Warden
8.2k • written 3.0 years ago by
geocarvalho
▴ 330
0
votes
1
reply
1.1k
views
Comment:
C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.0 years ago by
geocarvalho
▴ 330
0
votes
0
replies
4.6k
views
Comment:
C: Using limma to find differentially methylated probes across clusters
3.0 years ago by
geocarvalho
▴ 330
1
vote
0
replies
1.6k
views
Answer:
A: CNV and pseudogenes
3.1 years ago by
geocarvalho
▴ 330
0
votes
0
replies
196k
views
Comment:
C: How To Update R In Ubuntu ?
3.2 years ago by
geocarvalho
▴ 330
9
votes
1
reply
77k
views
Answer:
A: Extract Sub-Set Of Regions From Vcf File
updated 3.4 years ago by
Ram
39k • written 5.7 years ago by
geocarvalho
▴ 330
0
votes
0
replies
2.0k
views
Answer:
A: Trying to Identify larger indels from NGS data, FASTQ format
4.1 years ago by
geocarvalho
▴ 330
1
vote
0
replies
2.0k
views
Comment:
C: Identifying CNVs from targeted amplicon sequencing
4.2 years ago by
geocarvalho
▴ 330
0
votes
1
reply
2.0k
views
Comment:
C: Identifying CNVs from targeted amplicon sequencing
4.2 years ago by
geocarvalho
▴ 330
0
votes
0
replies
16k
views
Comment:
C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.3 years ago by
geocarvalho
▴ 330
0
votes
1
reply
16k
views
Comment:
C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.3 years ago by
geocarvalho
▴ 330
1
vote
2
replies
16k
views
Comment:
C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.3 years ago by
geocarvalho
▴ 330
0
votes
0
replies
1.3k
views
Answer:
A: Annotation tool for cnvKit
4.5 years ago by
geocarvalho
▴ 330
0
votes
0
replies
2.4k
views
Comment:
C: how to fix error in getGEO function?
4.8 years ago by
geocarvalho
▴ 330
0
votes
1
reply
2.4k
views
Comment:
C: how to fix error in getGEO function?
updated 4.8 years ago by
h.mon
34k • written 4.8 years ago by
geocarvalho
▴ 330
0
votes
0
replies
1.4k
views
Answer:
A: Bioinformatics workshop or training courses
4.8 years ago by
geocarvalho
▴ 330
0
votes
0
replies
1.2k
views
Answer:
A: Large deletions in exome sequencing data
5.0 years ago by
geocarvalho
▴ 330
2
votes
1
reply
2.0k
views
Answer:
A: Identifying CNVs from targeted amplicon sequencing
5.0 years ago by
geocarvalho
▴ 330
0
votes
0
replies
2.6k
views
Answer:
A: Plotting common SNPs from four individual from a vcf file
5.3 years ago by
geocarvalho
▴ 330
2
votes
0
replies
2.2k
views
Answer:
A: R books with Quantitative Genetics examples?
5.3 years ago by
geocarvalho
▴ 330
1
vote
0
replies
1.2k
views
Answer:
A: Packages/modules for CNV, Indels, SNPs analysis
5.3 years ago by
geocarvalho
▴ 330
0
votes
0
replies
3.4k
views
Comment:
C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
5.4 years ago by
geocarvalho
▴ 330
4
votes
0
replies
11k
views
Answer:
A: List all available databases for ANNOVAR
5.4 years ago by
geocarvalho
▴ 330
2
votes
0
replies
3.4k
views
Answer:
A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
5.4 years ago by
geocarvalho
▴ 330
0
votes
1
reply
1.6k
views
Answer:
A: How to start analyzing next-generation DNA and RNA sequencing data?
5.6 years ago by
geocarvalho
▴ 330
1
vote
0
replies
1.4k
views
Answer:
A: Where can I find a sample analysis pipeline for DNA?
6.1 years ago by
geocarvalho
▴ 330
1
vote
0
replies
1.9k
views
Comment:
C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
6.1 years ago by
geocarvalho
▴ 330
0
votes
1
reply
1.4k
views
Answer:
A: Different reference and variant allele in IonTorrent variantCaller
6.1 years ago by
geocarvalho
▴ 330
1
vote
0
replies
4.2k
views
Answer:
A: Copy Number Variation Tools
6.2 years ago by
geocarvalho
▴ 330
0
votes
0
replies
5.9k
views
Answer:
A: Annotation of Structural Variants and CNVs
6.2 years ago by
geocarvalho
▴ 330
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