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2
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205k
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Answer: Answer: How to download raw sequence data from GEO/SRA
12 months ago by geocarvalho ▴ 400
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0
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5.3k
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Comment: Comment: How to run Picard docker image
14 months ago by geocarvalho ▴ 400
1
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2
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1.1k
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BAM to CRAM and BAM recover with smaller size
BAM samtools CRAM
updated 19 months ago by ★ 1.3k • written 20 months ago by ▴ 400
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0
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15k
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Answer: Answer: bedGraphToBigWig Install error
2.3 years ago by geocarvalho ▴ 400
2
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1
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5.3k
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Answer: Answer: How to run Picard docker image
2.4 years ago by geocarvalho ▴ 400
1
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0
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10k
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Answer: Answer: filtering the reads based on the length
2.5 years ago by geocarvalho ▴ 400
0
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0
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12k
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Comment: Comment: filter reads in BAM having a tag
2.5 years ago by geocarvalho ▴ 400
3
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0
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4.6k
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Comment: Comment: Paternity Testing from WGS Trio
2.5 years ago by geocarvalho ▴ 400
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0
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2.3k
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Answer: Answer: Removing multi-variant records from vcf file
2.5 years ago by geocarvalho ▴ 400
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0
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2.4k
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Answer: Answer: GATK4 ASEReadCounter Function of VCF
2.5 years ago by geocarvalho ▴ 400
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0
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101k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
2.6 years ago by geocarvalho ▴ 400
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0
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9.3k
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Answer: Answer: How to access specifically 30x NA12878 sequencing runs
19 months ago by geocarvalho ▴ 400
1
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0
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2.2k
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Comment: Comment: Understanding bam tracks
3.2 years ago by geocarvalho ▴ 400
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1
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3.5k
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Comment: Comment: How to retrieve the SNP data from Bam file
3.8 years ago by geocarvalho ▴ 400
0
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1
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6.1k
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Comment: Comment: Copy Number Variation Tools
3.8 years ago by geocarvalho ▴ 400
4
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0
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10k
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Answer: Answer: snpEFF not able to download GRCH38 ?
4.2 years ago by geocarvalho ▴ 400
0
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1
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101k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
4.4 years ago by geocarvalho ▴ 400
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0
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963
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Comment: C: Variant not annotated by ANNOVAR in the main transcript
4.8 years ago by geocarvalho ▴ 400
0
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1
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963
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Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
4.8 years ago by geocarvalho ▴ 400
1
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0
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31k
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Answer: A: Where to download blacklisted regions?
5.4 years ago by geocarvalho ▴ 400
0
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1
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2.8k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
5.4 years ago by geocarvalho ▴ 400
6
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8
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2.8k
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 5.4 years ago by 8.3k • written 5.4 years ago by ▴ 400
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1
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2.8k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
5.4 years ago by geocarvalho ▴ 400
0
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0
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6.3k
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Comment: C: Using limma to find differentially methylated probes across clusters
5.5 years ago by geocarvalho ▴ 400
1
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0
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3.1k
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Answer: A: CNV and pseudogenes
5.5 years ago by geocarvalho ▴ 400
0
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0
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211k
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Comment: C: How To Update R In Ubuntu ?
5.7 years ago by geocarvalho ▴ 400
9
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1
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101k
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Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 5.9 years ago by 45k • written 8.1 years ago by ▴ 400
0
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0
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3.2k
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
6.6 years ago by geocarvalho ▴ 400
1
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0
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4.3k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
6.7 years ago by geocarvalho ▴ 400
0
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1
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4.3k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
6.7 years ago by geocarvalho ▴ 400
0
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0
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24k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.7 years ago by geocarvalho ▴ 400
0
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1
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24k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.7 years ago by geocarvalho ▴ 400
1
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2
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24k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.7 years ago by geocarvalho ▴ 400
0
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0
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2.0k
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Answer: A: Annotation tool for cnvKit
7.0 years ago by geocarvalho ▴ 400
0
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0
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3.6k
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Comment: C: how to fix error in getGEO function?
7.2 years ago by geocarvalho ▴ 400
0
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1
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3.6k
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Comment: C: how to fix error in getGEO function?
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 400
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0
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2.6k
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Answer: A: Bioinformatics workshop or training courses
7.3 years ago by geocarvalho ▴ 400
0
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0
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1.9k
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Answer: A: Large deletions in exome sequencing data
7.4 years ago by geocarvalho ▴ 400
2
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1
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4.3k
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Answer: A: Identifying CNVs from targeted amplicon sequencing
7.4 years ago by geocarvalho ▴ 400
0
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0
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3.6k
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Answer: A: Plotting common SNPs from four individual from a vcf file
7.8 years ago by geocarvalho ▴ 400
2
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0
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3.3k
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Answer: A: R books with Quantitative Genetics examples?
7.8 years ago by geocarvalho ▴ 400
1
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0
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2.0k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
7.8 years ago by geocarvalho ▴ 400
0
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0
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5.0k
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Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.9 years ago by geocarvalho ▴ 400
4
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0
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16k
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Answer: A: List all available databases for ANNOVAR
7.9 years ago by geocarvalho ▴ 400
2
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0
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5.0k
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Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.9 years ago by geocarvalho ▴ 400
0
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1
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3.1k
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Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
8.1 years ago by geocarvalho ▴ 400
1
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0
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2.3k
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Answer: A: Where can I find a sample analysis pipeline for DNA?
8.6 years ago by geocarvalho ▴ 400
1
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0
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2.5k
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Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
8.6 years ago by geocarvalho ▴ 400
0
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1
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2.2k
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Answer: A: Different reference and variant allele in IonTorrent variantCaller
8.6 years ago by geocarvalho ▴ 400
1
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0
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6.1k
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Answer: A: Copy Number Variation Tools
8.7 years ago by geocarvalho ▴ 400
51 results • Page 1 of 2
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