Hello, I have a variant in the PMS2 gene that wasn't annotated by ANNOVAR using the main transcript (NM_000535). I'm using the database for hg38 genome.
chr7 6003982 6003982 G A
It is a stop codon but in the main transcript is another non-synonymous variant. Do you know if I can add the other transcript by a parameter from ANNOVAR?
Any help is appreciated. Best regards, George.