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3
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Answer: A: Using tabix to read a tsv.bgz with genomic coordinate in single column<chromosom
5.7 years ago by finswimmer 16k
5
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1
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5.1k
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Answer: C: Tabix on bed file can't parse
5.7 years ago by finswimmer 16k
11
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2
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21k
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Answer: A: extract and generate a VCF file with only "PASS"
5.7 years ago by finswimmer 16k
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Answer: A: Identifying unique SNPs between species
5.8 years ago by finswimmer 16k
2
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3.2k
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Answer: A: Merge VCF files with diploid reference calls in different order for same positio
5.8 years ago by finswimmer 16k
4
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1.8k
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Answer: A: Triplet frequencies in human genome
5.8 years ago by finswimmer 16k
3
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8.4k
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Answer: A: Removing homozygous reference genotypes from multi-sample vcf file
5.8 years ago by finswimmer 16k
2
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1
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3.1k
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Answer: C: snpEff: Fatal error reading file the input VCF files and stop runing
5.8 years ago by finswimmer 16k
2
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3.2k
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Answer: A: tabix to exclude chromosomes from vcf
5.8 years ago by finswimmer 16k
4
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4.3k
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Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
5.8 years ago by finswimmer 16k
4
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1
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3.8k
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Answer: A: samtools SNP calling
5.8 years ago by finswimmer 16k
3
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819
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Answer: A: awk to organize bed file
5.8 years ago by finswimmer 16k
5
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2
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6.8k
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Answer: A: Merge contigs in fasta file
5.9 years ago by finswimmer 16k
1
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1
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2.0k
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
5.9 years ago by finswimmer 16k
1
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1
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2.2k
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Answer: A: Finding if dbSNP type in biomart
5.9 years ago by finswimmer 16k
0
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1
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4.1k
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Answer: Answer: filter unique variants from multiple VCF files
5.9 years ago by finswimmer 16k
0
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890
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Answer: A: How to Deduplicate files
5.9 years ago by finswimmer 16k
1
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1
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1.4k
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Answer: C: How to pivot pandas dataframe?
5.9 years ago by finswimmer 16k
0
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1
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5.4k
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Answer: A: How to extract entire info column from VCF file using bcftools
5.9 years ago by finswimmer 16k
0
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0
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2.5k
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Answer: A: Want to loop through list of BLAST objects in python
5.9 years ago by finswimmer 16k
2
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0
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942
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Answer: A: How to consider/get the g. positions for variants in introns?
6.0 years ago by finswimmer 16k
0
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0
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1.5k
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Answer: A: Should I use the same reference indexing command of bwa for WGS and WES analysis
6.0 years ago by finswimmer 16k
1
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1
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2.8k
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Answer: A: The confused result of samtools sort
6.0 years ago by finswimmer 16k
2
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0
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2.3k
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Answer: A: How to edit fasta header with underscores
6.0 years ago by finswimmer 16k
1
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0
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2.2k
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Answer: A: parse of file multifasta in python
6.1 years ago by finswimmer 16k
1
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0
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2.5k
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Answer: A: Percent reads mapped in Picard
6.1 years ago by finswimmer 16k
3
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18k
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Answer: A: bcftools reheader -h
6.1 years ago by finswimmer 16k
1
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0
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3.1k
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Answer: A: How to extract organisms name from the headers in a multi-fasta file?
6.1 years ago by finswimmer 16k
1
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1
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13k
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Answer: A: how to extract the genomic positions and chromosome number for a list of genes
6.1 years ago by finswimmer 16k
4
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1
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4.5k
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Answer: A: Taking information from a .txt and converting it to fasta
6.1 years ago by finswimmer 16k
6
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1
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3.2k
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Answer: A: Filter Fastq file by seq
6.1 years ago by finswimmer 16k
3
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1
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8.8k
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Answer: A: How to check the presence of mutations of a specific gene in a specific VCF file
6.1 years ago by finswimmer 16k
2
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0
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8.2k
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Answer: A: Creation of a VCF file from scratch with python
6.1 years ago by finswimmer 16k
3
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1
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1.0k
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Answer: C: CYP2D6 Variant Calling
6.1 years ago by finswimmer 16k
4
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0
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8.8k
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Answer: A: how to run freebayes in multi-thread
6.1 years ago by finswimmer 16k
6
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1
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2.0k
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Answer: A: How to get short and sweet gene names/description for gene IDs?
6.1 years ago by finswimmer 16k
2
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1
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2.6k
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Answer: A: How to extract only sequences that contain a specific percentage of Cysteines (
6.1 years ago by finswimmer 16k
2
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1
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1.9k
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Answer: A: removing copy number variations using bcftools
6.1 years ago by finswimmer 16k
1
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1
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1.7k
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Answer: C: combining overlapping vcf's into one
6.1 years ago by finswimmer 16k
0
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1
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5.2k
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Answer: A: How to get number of exons for each transcript in biomart
6.1 years ago by finswimmer 16k
2
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0
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2.5k
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Answer: A: vcf file from gene name and amino acid change
6.1 years ago by finswimmer 16k
2
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1
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3.2k
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Answer: A: why GATK makes things more complicated ?
6.1 years ago by finswimmer 16k
1
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1
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5.9k
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Answer: A: How to extract pattern matching sequences from a fasta file?
updated 6.1 years ago by 47k • written 6.1 years ago by 16k
2
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0
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1.6k
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Answer: A: filter gene expression matrix
6.1 years ago by finswimmer 16k
5
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0
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6.4k
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Answer: A: Keep variants with 0% missing in VCF
6.1 years ago by finswimmer 16k
3
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0
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1.3k
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Answer: A: RS numbers to VCF format -sheep genome
6.1 years ago by finswimmer 16k
4
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0
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6.1k
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Answer: A: Calling SNPs using bcftools mpileup
6.1 years ago by finswimmer 16k
3
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1
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2.8k
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Answer: A: bedtools subtract still overlaps by 1bp?
6.1 years ago by finswimmer 16k
7
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2
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3.9k
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Answer: C: bcftools query missense_variant SNPs from gnomad VCF files
6.1 years ago by finswimmer 16k
5
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2
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10k
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Answer: A: Remove not polymorphic sites from VCF
6.2 years ago by finswimmer 16k
417 results • Page 2 of 9
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