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Showing :
answers
3
votes
0
replies
4.5k
views
Answer:
A: Using tabix to read a tsv.bgz with genomic coordinate in single column<chromosom
5.3 years ago by
finswimmer
16k
5
votes
1
reply
4.8k
views
Answer:
C: Tabix on bed file can't parse
5.4 years ago by
finswimmer
16k
11
votes
2
replies
20k
views
Answer:
A: extract and generate a VCF file with only "PASS"
5.4 years ago by
finswimmer
16k
0
votes
0
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2.6k
views
Answer:
A: Identifying unique SNPs between species
5.4 years ago by
finswimmer
16k
2
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0
replies
2.9k
views
Answer:
A: Merge VCF files with diploid reference calls in different order for same positio
5.4 years ago by
finswimmer
16k
4
votes
1
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1.7k
views
Answer:
A: Triplet frequencies in human genome
5.4 years ago by
finswimmer
16k
3
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1
reply
7.7k
views
Answer:
A: Removing homozygous reference genotypes from multi-sample vcf file
5.4 years ago by
finswimmer
16k
2
votes
1
reply
2.9k
views
Answer:
C: snpEff: Fatal error reading file the input VCF files and stop runing
5.4 years ago by
finswimmer
16k
2
votes
0
replies
3.0k
views
Answer:
A: tabix to exclude chromosomes from vcf
5.4 years ago by
finswimmer
16k
4
votes
0
replies
4.1k
views
Answer:
C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
5.4 years ago by
finswimmer
16k
4
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1
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3.7k
views
Answer:
A: samtools SNP calling
5.4 years ago by
finswimmer
16k
3
votes
1
reply
736
views
Answer:
A: awk to organize bed file
5.5 years ago by
finswimmer
16k
5
votes
2
replies
6.3k
views
Answer:
A: Merge contigs in fasta file
5.5 years ago by
finswimmer
16k
1
vote
1
reply
1.9k
views
Answer:
A: Which reference genome for the annotation of the 1KG variant data by snpEff?
5.5 years ago by
finswimmer
16k
1
vote
1
reply
1.9k
views
Answer:
A: Finding if dbSNP type in biomart
5.5 years ago by
finswimmer
16k
0
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1
reply
3.9k
views
Answer:
Answer: filter unique variants from multiple VCF files
5.5 years ago by
finswimmer
16k
0
votes
0
replies
829
views
Answer:
A: How to Deduplicate files
5.5 years ago by
finswimmer
16k
1
vote
1
reply
1.3k
views
Answer:
C: How to pivot pandas dataframe?
5.5 years ago by
finswimmer
16k
0
votes
1
reply
5.2k
views
Answer:
A: How to extract entire info column from VCF file using bcftools
5.5 years ago by
finswimmer
16k
0
votes
0
replies
2.4k
views
Answer:
A: Want to loop through list of BLAST objects in python
5.6 years ago by
finswimmer
16k
2
votes
0
replies
873
views
Answer:
A: How to consider/get the g. positions for variants in introns?
5.6 years ago by
finswimmer
16k
0
votes
0
replies
1.4k
views
Answer:
A: Should I use the same reference indexing command of bwa for WGS and WES analysis
5.6 years ago by
finswimmer
16k
1
vote
1
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2.6k
views
Answer:
A: The confused result of samtools sort
5.6 years ago by
finswimmer
16k
2
votes
0
replies
2.1k
views
Answer:
A: How to edit fasta header with underscores
5.6 years ago by
finswimmer
16k
1
vote
0
replies
2.1k
views
Answer:
A: parse of file multifasta in python
5.7 years ago by
finswimmer
16k
1
vote
0
replies
2.3k
views
Answer:
A: Percent reads mapped in Picard
5.7 years ago by
finswimmer
16k
3
votes
0
replies
17k
views
Answer:
A: bcftools reheader -h
5.7 years ago by
finswimmer
16k
1
vote
0
replies
2.9k
views
Answer:
A: How to extract organisms name from the headers in a multi-fasta file?
5.7 years ago by
finswimmer
16k
1
vote
1
reply
12k
views
Answer:
A: how to extract the genomic positions and chromosome number for a list of genes
5.7 years ago by
finswimmer
16k
4
votes
1
reply
4.2k
views
Answer:
A: Taking information from a .txt and converting it to fasta
5.7 years ago by
finswimmer
16k
6
votes
1
reply
3.0k
views
Answer:
A: Filter Fastq file by seq
5.7 years ago by
finswimmer
16k
3
votes
1
reply
8.1k
views
Answer:
A: How to check the presence of mutations of a specific gene in a specific VCF file
5.7 years ago by
finswimmer
16k
2
votes
0
replies
7.9k
views
Answer:
A: Creation of a VCF file from scratch with python
5.7 years ago by
finswimmer
16k
3
votes
1
reply
944
views
Answer:
C: CYP2D6 Variant Calling
5.7 years ago by
finswimmer
16k
4
votes
0
replies
8.2k
views
Answer:
A: how to run freebayes in multi-thread
5.7 years ago by
finswimmer
16k
6
votes
1
reply
1.9k
views
Answer:
A: How to get short and sweet gene names/description for gene IDs?
5.7 years ago by
finswimmer
16k
2
votes
1
reply
2.4k
views
Answer:
A: How to extract only sequences that contain a specific percentage of Cysteines (
5.7 years ago by
finswimmer
16k
2
votes
1
reply
1.8k
views
Answer:
A: removing copy number variations using bcftools
5.7 years ago by
finswimmer
16k
1
vote
1
reply
1.6k
views
Answer:
C: combining overlapping vcf's into one
5.7 years ago by
finswimmer
16k
0
votes
1
reply
4.8k
views
Answer:
A: How to get number of exons for each transcript in biomart
5.7 years ago by
finswimmer
16k
2
votes
0
replies
2.4k
views
Answer:
A: vcf file from gene name and amino acid change
5.7 years ago by
finswimmer
16k
2
votes
1
reply
2.8k
views
Answer:
A: why GATK makes things more complicated ?
5.7 years ago by
finswimmer
16k
1
vote
1
reply
5.5k
views
Answer:
A: How to extract pattern matching sequences from a fasta file?
updated 5.7 years ago by
WouterDeCoster
47k • written 5.7 years ago by
finswimmer
16k
2
votes
0
replies
1.5k
views
Answer:
A: filter gene expression matrix
5.8 years ago by
finswimmer
16k
5
votes
0
replies
6.2k
views
Answer:
A: Keep variants with 0% missing in VCF
5.8 years ago by
finswimmer
16k
3
votes
0
replies
1.2k
views
Answer:
A: RS numbers to VCF format -sheep genome
5.8 years ago by
finswimmer
16k
4
votes
0
replies
5.9k
views
Answer:
A: Calling SNPs using bcftools mpileup
5.8 years ago by
finswimmer
16k
3
votes
1
reply
2.6k
views
Answer:
A: bedtools subtract still overlaps by 1bp?
5.8 years ago by
finswimmer
16k
7
votes
2
replies
3.7k
views
Answer:
C: bcftools query missense_variant SNPs from gnomad VCF files
5.8 years ago by
finswimmer
16k
5
votes
2
replies
9.6k
views
Answer:
A: Remove not polymorphic sites from VCF
5.8 years ago by
finswimmer
16k
417 results • Page
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