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1
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1.1k
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Answer: A: How to FLAG low quality SNPs in samtools VCF
4.4 years ago by finswimmer 16k
0
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1
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952
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Comment: C: Extracting Allele Frequencies at a set of given positions
4.4 years ago by finswimmer 16k
1
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1.9k
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Answer: A: Extract N amino acids from fasta file
4.4 years ago by finswimmer 16k
1
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1
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3.4k
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Comment: C: Switch ref/alt alleles vcf file
4.4 years ago by finswimmer 16k
6
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10
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4.1k
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tabix for ID column
snp tabix
updated 2.6 years ago by ★ 9.4k • written 6.9 years ago by 16k
7
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3
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5.8k
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Answer: C: sorting a multi-sample (genotype) vcf file
4.4 years ago by finswimmer 16k
0
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33k
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Comment: C: How to read fastq file with Python
4.4 years ago by finswimmer 16k
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0
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8.6k
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Comment: C: bcftools variant filteration
4.4 years ago by finswimmer 16k
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2.9k
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Comment: C: Error with bcftools and vcftools and removing individuals
4.4 years ago by finswimmer 16k
2
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1
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1.4k
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Answer: A: Does BQSR remove duplicate sequence in library?
4.4 years ago by finswimmer 16k
0
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1
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2.7k
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Comment: C: merge multiple files by commom column names
4.5 years ago by finswimmer 16k
0
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1
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2.7k
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Comment: C: merge multiple files by commom column names
4.5 years ago by finswimmer 16k
0
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1
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2.7k
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Comment: C: merge multiple files by commom column names
4.5 years ago by finswimmer 16k
5
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1
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2.7k
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Answer: A: merge multiple files by commom column names
4.5 years ago by finswimmer 16k
4
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1
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5.7k
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Answer: A: Extract columns from VCF file using bcftools preserving all the header info
4.5 years ago by finswimmer 16k
2
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0
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1.8k
views
Answer: Answer: How to turn off Quality score binning in bcl2fastq
4.5 years ago by finswimmer 16k
3
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0
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813
views
Answer: A: Differences in HGVS notation
4.5 years ago by finswimmer 16k
1
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1
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2.1k
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Comment: C: Bcftools concat gives chromosome contiguous error?
4.5 years ago by finswimmer 16k
0
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0
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6.0k
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Comment: C: Extract specific sequence from FASTA file
4.5 years ago by finswimmer 16k
0
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1
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2.5k
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Comment: C: bcftools mpileup with --region option output wrong consequence
4.5 years ago by finswimmer 16k
0
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1
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2.5k
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Comment: C: bcftools mpileup with --region option output wrong consequence
4.5 years ago by finswimmer 16k
3
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1
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3.4k
views
Comment: C: filter vcf to include only sites which have at least one homozygous alt call
4.5 years ago by finswimmer 16k
0
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1
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1.7k
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Comment: C: How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
4.5 years ago by finswimmer 16k
0
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1
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5.4k
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Comment: C: how to merge gvcf using bcftools
4.5 years ago by finswimmer 16k
0
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1
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5.4k
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Comment: C: how to merge gvcf using bcftools
4.5 years ago by finswimmer 16k
1
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1
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2.0k
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Comment: C: awk, copy and paste single line command
4.5 years ago by finswimmer 16k
0
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1
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5.4k
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Comment: C: how to merge gvcf using bcftools
4.5 years ago by finswimmer 16k
1
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0
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1.7k
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Comment: C: Removing the last part of fasta header in many alignmnet files
4.5 years ago by finswimmer 16k
2
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1
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5.1k
views
Comment: C: pysam alignment error
4.5 years ago by finswimmer 16k
1
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1
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5.1k
views
Comment: C: pysam alignment error
4.5 years ago by finswimmer 16k
1
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1
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1.8k
views
Comment: C: vcftools minDP filter not working for samtools genotype calling output
4.5 years ago by finswimmer 16k
1
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2
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5.1k
views
Comment: C: pysam alignment error
4.5 years ago by finswimmer 16k
0
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1
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5.1k
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Comment: C: pysam alignment error
4.5 years ago by finswimmer 16k
0
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0
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914
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Comment: C: Output bigger than input. VCFtools
4.6 years ago by finswimmer 16k
0
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1
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1.4k
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Comment: C: non-SNP variants in a vcf merge file
4.6 years ago by finswimmer 16k
0
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0
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1.4k
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Comment: C: Comparing calls from different VCFs
4.6 years ago by finswimmer 16k
1
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0
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2.5k
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Comment: C: Loop to change a @RG in a BAM file
4.6 years ago by finswimmer 16k
1
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0
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2.2k
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Comment: C: Error: Bad BCF record - shared section malformed or too short after vcftools fil
4.6 years ago by finswimmer 16k
2
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1
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2.2k
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Comment: C: Error: Bad BCF record - shared section malformed or too short after vcftools fil
4.6 years ago by finswimmer 16k
2
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0
replies
884
views
Answer: A: Entrez loop errors
4.6 years ago by finswimmer 16k
0
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0
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5.1k
views
Comment: C: cram to bam conversion
4.6 years ago by finswimmer 16k
0
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0
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8.2k
views
Answer: A: Python FASTA scripting
4.6 years ago by finswimmer 16k
0
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1
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1.1k
views
Comment: C: Double Check VCF Calls in Corresponding .bam Files
4.6 years ago by finswimmer 16k
0
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0
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15k
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Comment: C: Generating consensus sequence from bam file
4.6 years ago by finswimmer 16k
1
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1
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15k
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Comment: C: Generating consensus sequence from bam file
4.6 years ago by finswimmer 16k
1
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0
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1.3k
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Comment: C: How to handle allosomes and chrM in GATK?
4.6 years ago by finswimmer 16k
1
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0
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1.1k
views
Comment: C: Need tool for Convert vcf into fa
4.6 years ago by finswimmer 16k
0
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0
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728
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Comment: C: Identify how many inserts mapped to a region
4.6 years ago by finswimmer 16k
0
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1
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2.0k
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Comment: C: Clipping primer after alignment
4.6 years ago by finswimmer 16k
1
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0
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1.1k
views
Answer: A: Generating consensus sequence from bam file
4.6 years ago by finswimmer 16k
1,610 results • Page 2 of 33
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