User: mkh

gravatar for mkh
mkh40
Reputation:
40
Status:
New User
Location:
USA/CT
Last seen:
2 weeks, 5 days ago
Joined:
2 years, 3 months ago
Email:
m**************@gmail.com

I am working on mapping of genetic regulatory networks of large nucleotide dataset

Posts by mkh

<prev • 33 results • page 1 of 4 • next >
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Comment: C: RNAseq service recommendations
... Thank you. I am sorry for my bad question. So I edited my question to following: Which of these NGSs sequencers recommended HiSeq2500, Hiseq4000, NovaSeq and MiSeq ...
written 24 days ago by mkh40
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RNAseq service recommendations
... Hi All, I have recently started RNA-seq and ChiP-Seq assay and wanted to ask your advice as to where you guys recommend I could have them sequenced? I have the recommendation to use the Yale Facility but I have heard good things about other services, private and otherwise. What do you recommend? A ...
next-gen rna-seq written 24 days ago by mkh40 • updated 24 days ago by maxwhjohn198880
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Comment: A: Construct a small computing server for GWAS Analysis
... thank you. Any suggestions for vendor? ...
written 9 weeks ago by mkh40
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Comment: A: Construct a small computing server for GWAS Analysis
... thank you for reply. the problem is that i am going to use this server to prepare md simulation as well. the hpc at my university is very expensive and it would be more cheaper for me to have my own server for my primary computation and only use hpc of ut for only heavy analysis. somebody suggest me ...
written 9 weeks ago by mkh40
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Forum: Construct a small computing server for GWAS Analysis
... Hi All, I would like to build up a small private server for high-throughput sequence analysis purposes. Unfortunately, I have no experience with building up such a computing server. I would appreciate if you can make a comment on this. What type of criteria do I need to consider? I know the high RA ...
assembly forum written 9 weeks ago by mkh40
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Merge overlapped gene coordinates in bed file format
... Hi I have a bed format file which looks like this: geneid start stop geneA 100 250 geneA 120 320 geneA 240 600 geneB 1100 1800 geneB 1110 1600 geneB 1500 1700 and I would like to merge the overlapping intervals as follow: geneid start stop geneA 100 600 geneB 1100 1800 Are there any ...
chip-seq written 11 weeks ago by mkh40 • updated 11 weeks ago by Pierre Lindenbaum121k
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Comment: C: Specific Antibodies for ChiP-Seq assay
... Thanks! I appreciate it! ...
written 12 weeks ago by mkh40
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Comment: C: Specific Antibodies for ChiP-Seq assay
... I know it is so too many questions but I could not find a place to ask my inquiries. I have seen in some papers the people raising target antibody in the rabbit and they use it for ChIP-seq assay. I am wondering how they modify that antibody and pull it down during ChIP process? ...
written 12 weeks ago by mkh40
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Comment: C: Specific Antibodies for ChiP-Seq assay
... Many thanks @Friederike and @ATpoint. @Atpoint, how do you test if tag perturbing the binding of your target transcription factor or not? ...
written 12 weeks ago by mkh40
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Specific Antibodies for ChiP-Seq assay
... Hi all, I have a computation background and I have no idea about the experiment. From the experimental view, I would like to know how could I generate/design specific antibody/ies for a new Protein in order to do ChiP-Seq assay? Any reference, book or papers appreciated. I know this is a very gener ...
chip-seq written 12 weeks ago by mkh40

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Popular Question 26 days ago, created a question with more than 1,000 views. For How to get PCA3 and PCA4 from Deseq2?
Popular Question 6 months ago, created a question with more than 1,000 views. For Difference Between Gene Expression And Transcript Expression
Autobiographer 2.3 years ago, has more than 80 characters in the information field of the user's profile.

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