User: esraesmeray1990

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Posts by esraesmeray1990

<prev • 16 results • page 1 of 2 • next >
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gatk AnalyzeCovariates The following object is masked from package stats
... Hi I am tryin to use gatk AnalyzeCovariates and compare outpıuts of 2 pass using folloging code: gatk AnalyzeCovariates --before-report-file sample_addRG.recal_pass1.tabl --after-report-file sample_addRG.recal_pass2.tabl --plots-report-file sample.output.pdf But it gives following error. ...
R analyzecovariates stats gatk written 6 weeks ago by esraesmeray199010
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Comment: C: defuse running error message
... Hi, I tried but it gives the same error :( defuse_run.pl -d ~/dataset_directory -1 read1.fq.gz -2 read2.fq.gz -o output_dir ...
written 7 weeks ago by esraesmeray199010
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Comment: C: defuse running error message
... I used anaconda to install defuse: esra@asus:~$ conda install -c dranew defuse Yes defuse.cdna.fa is in dataset_directory and files are not empty. Download the Reference Dataset: esra@asus:~$ defuse_create_ref.pl -d dataset_directory esra@asus:~/dataset_directory$ ls defuse ...
written 7 weeks ago by esraesmeray199010
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defuse running error message
... I am trying to run defuse tool but ı am taking following error message i am kind of new so i really dont understand what is the probem. If anyone help me i will be appreciate . esra@asus:/media/esra/Data$ defuse_run.pl -d dataset_directory -1 read1.fq.gz -2 read2.fq.gz -o output_dir ...
software error defuse written 7 weeks ago by esraesmeray199010
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conda Solving environment: failed
... Hi I am trying to install defuse and chimerascan using conda but everytime i am taking following errors: conda install -c dranew defuse Solving environment: failed UnsatisfiableError: The following specifications were found to be in conflict: - defuse -> r=3.3.2 - ...
defuse chimerascan anaconda conda written 7 weeks ago by esraesmeray199010 • updated 7 weeks ago by Devon Ryan88k
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Comment: C: why FastQC tool K-mer content parameter is absent?
... It seems easy but if you don't know the reason it would be a big problem, the problem is solved thank you a lot. ...
written 8 weeks ago by esraesmeray199010
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Comment: C: why FastQC tool K-mer content parameter is absent?
... I used Version 0.11.8. ...
written 8 weeks ago by esraesmeray199010
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why FastQC tool K-mer content parameter is absent?
... Hi I used fastqc tool after running Afterqc tool but at the result I saw k-mer content parameter is absent. what could be the reason of it and how should i add k-mer content to analysis? by the way, I run FastQC after Fastp tool for the same data and there was k-mer content. ...
k-mer fastqc fastp wts afterqc written 8 weeks ago by esraesmeray199010
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Comment: C: Best tool for Chimeric Transcript Analysis?
... These papers are very helpful, thanks a lot. ...
written 9 weeks ago by esraesmeray199010
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Best tool for Chimeric Transcript Analysis?
... Hi I am searching a good tool for chimeric transcript analysis. (I have WTS) I see most of the people use TopHat2 for this aim but I also found a tool called fusioncatcher which is one of the best tool for me but it requires 24 GB RAM and my laptop has just 8GB RAM. So if you can recommend some too ...
ngs chimeric fusion wts rna-seq written 9 weeks ago by esraesmeray199010 • updated 9 weeks ago by guillaume.rbt530

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