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0
votes
0
replies
234
views
Merge CollectInsertSizeMetrics outputs
Picard
CollectInsertSizeMetrics
7 months ago by
MS
▴ 30
4
votes
4
replies
2.1k
views
CIBERSORT input file for RNA-Seq data
Cibersort
RNA-Seq
updated 6 months ago by
dare_devil
★ 3.1k • written 19 months ago by
MS
▴ 30
0
votes
0
replies
206
views
determination of miRNA FPKM value
mirdeep2
fpkm
cufflinks
13 months ago by
MS
▴ 30
1
vote
2
replies
482
views
Tumor cell percentage detection tool
cfdna
percentage
Tumor
maftools
inferheterogeneity
updated 14 months ago by
iraun
6.0k • written 18 months ago by
MS
▴ 30
0
votes
1
reply
530
views
How to get vafCol converting annovar outputs to maf object
inferHeterogeneity
maftools
annovarToMaf
updated 14 months ago by
Getting there
▴ 110 • written 20 months ago by
MS
▴ 30
0
votes
1
reply
360
views
Comment:
Comment: Tutorial for ROC curve analysis using DE RNA data in R
14 months ago by
MS
▴ 30
0
votes
3
replies
360
views
Tutorial for ROC curve analysis using DE RNA data in R
ROC
updated 14 months ago by
iraun
6.0k • written 14 months ago by
MS
▴ 30
0
votes
6
replies
957
views
Unsupervised hierarchical clustering of DEG in Rstudio
hclust
clustering
Unsupervised
DEGclustering
updated 16 months ago by
jared.andrews07
★ 14k • written 16 months ago by
MS
▴ 30
0
votes
1
reply
957
views
Comment:
Comment: Unsupervised hierarchical clustering of DEG in Rstudio
16 months ago by
MS
▴ 30
0
votes
1
reply
957
views
Comment:
Comment: Unsupervised hierarchical clustering of DEG in Rstudio
16 months ago by
MS
▴ 30
0
votes
0
replies
1.0k
views
Comment:
Comment: How to merge miRDeep2 counts for DeSeq2 analysis?
18 months ago by
MS
▴ 30
2
votes
4
replies
1.0k
views
How to merge miRDeep2 counts for DeSeq2 analysis?
DEmiRNA
miRDeep2
smallRNA-SEQ
18 months ago by
MS
▴ 30
0
votes
0
replies
1.0k
views
Comment:
Comment: How to merge miRDeep2 counts for DeSeq2 analysis?
18 months ago by
MS
▴ 30
0
votes
0
replies
337
views
Immune cell heterogeneity clustering using CIBERSORT output
cell
immune
hierarchical
cibersort
clustering
heterogeneity
Deconvolution
18 months ago by
MS
▴ 30
1
vote
3
replies
984
views
Header error while converting sam file to bam
errorconvertsamtobam
samtools
bowtie
samtoolsheadererror
updated 18 months ago by
aw7
▴ 140 • written 18 months ago by
MS
▴ 30
0
votes
0
replies
984
views
Comment:
Comment: Header error while converting sam file to bam
18 months ago by
MS
▴ 30
0
votes
0
replies
2.1k
views
Comment:
Comment: CIBERSORT input file for RNA-Seq data
18 months ago by
MS
▴ 30
0
votes
0
replies
448
views
Comparison of ChIPseeker and GREAT peak annotations
Peak
annotation
GREAT
ChIPseeker
19 months ago by
MS
▴ 30
7
votes
7
replies
2.7k
views
6 follow
How to get output of annotated genes from ChIPseeker tool
ChIPseeker
peakannotation
updated 20 months ago by
kashiff007
★ 1.9k • written 2.1 years ago by
MS
▴ 30
0
votes
0
replies
556
views
How to get vaf information column using annovartomaf
inferHeterogeneity
vafCol
maftools
t_vaf
annovartomaf
20 months ago by
MS
▴ 30
0
votes
0
replies
4.6k
views
Comment:
Comment: ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues usin
22 months ago by
MS
▴ 30
0
votes
2
replies
4.6k
views
Comment:
Comment: ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues usin
22 months ago by
MS
▴ 30
0
votes
1
reply
4.6k
views
Comment:
Comment: ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues usin
22 months ago by
MS
▴ 30
0
votes
1
reply
694
views
Comment:
Comment: how to determine genes expressed in NK cells using DE RNA-Seq data
23 months ago by
MS
▴ 30
0
votes
0
replies
694
views
Comment:
Comment: how to determine genes expressed in NK cells using DE RNA-Seq data
23 months ago by
MS
▴ 30
2
votes
5
replies
694
views
how to determine genes expressed in NK cells using DE RNA-Seq data
ImmGen
NKcellgenes
updated 23 months ago by
Ram
39k • written 23 months ago by
MS
▴ 30
2
votes
13
replies
1.9k
views
pearson correlation between lncRNA and mRNA
pearson
correlation
R
cor.test
updated 18 months ago by
Ram
39k • written 23 months ago by
MS
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: pearson correlation between lncRNA and mRNA
23 months ago by
MS
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: pearson correlation between lncRNA and mRNA
23 months ago by
MS
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: pearson correlation between lncRNA and mRNA
23 months ago by
MS
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: pearson correlation between lncRNA and mRNA
23 months ago by
MS
▴ 30
0
votes
1
reply
2.7k
views
Comment:
Comment: How to get output of annotated genes from ChIPseeker tool
2.1 years ago by
MS
▴ 30
0
votes
1
reply
2.7k
views
Comment:
Comment: How to get output of annotated genes from ChIPseeker tool
2.1 years ago by
MS
▴ 30
0
votes
0
replies
671
views
Best Tool for Tumor Cell Percentage Calculation (Paired NGS data)
next-gen
snp
SNP
NGS
3.9 years ago by
MS
▴ 30
0
votes
0
replies
5.0k
views
Comment:
A: Is there any way to convert ENST to HGNC symbol?
4.1 years ago by
MS
▴ 30
0
votes
0
replies
4.5k
views
Comment:
C: GATK Panel Of Normals (PoN)
4.1 years ago by
MS
▴ 30
0
votes
1
reply
4.5k
views
Comment:
A: GATK Panel Of Normals (PoN)
4.1 years ago by
MS
▴ 30
0
votes
0
replies
1.2k
views
gatk AnalyzeCovariates The following object is masked from package stats
R
AnalyzeCovariates
stats
gatk
4.3 years ago by
MS
▴ 30
0
votes
1
reply
1.5k
views
Comment:
C: defuse running error message
4.3 years ago by
MS
▴ 30
0
votes
1
reply
1.5k
views
Comment:
C: defuse running error message
4.3 years ago by
MS
▴ 30
1
vote
5
replies
1.5k
views
defuse running error message
defuse
software error
4.4 years ago by
MS
▴ 30
3
votes
1
reply
6.9k
views
conda Solving environment: failed
defuse
conda
anaconda
chimerascan
updated 4.4 years ago by
Devon Ryan
103k • written 4.4 years ago by
MS
▴ 30
0
votes
0
replies
1.4k
views
Comment:
C: why FastQC tool K-mer content parameter is absent?
4.4 years ago by
MS
▴ 30
0
votes
1
reply
1.4k
views
Comment:
C: why FastQC tool K-mer content parameter is absent?
4.4 years ago by
MS
▴ 30
2
votes
4
replies
1.4k
views
why FastQC tool K-mer content parameter is absent?
fastqc
wts
k-mer
afterQC
fastp
4.4 years ago by
MS
▴ 30
0
votes
0
replies
989
views
Comment:
C: Best tool for Chimeric Transcript Analysis?
4.4 years ago by
MS
▴ 30
2
votes
2
replies
989
views
Best tool for Chimeric Transcript Analysis?
RNA-Seq
WTS
Chimeric
NGS
fusion
updated 4.4 years ago by
guillaume.rbt
▴ 1000 • written 4.4 years ago by
MS
▴ 30
0
votes
0
replies
7.3k
views
Comment:
C: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for f
4.4 years ago by
MS
▴ 30
0
votes
0
replies
909
views
Comment:
C: AfterQC what is the reason killed
4.4 years ago by
MS
▴ 30
0
votes
0
replies
909
views
Comment:
C: AfterQC what is the reason killed
4.4 years ago by
MS
▴ 30
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