Question: gatk AnalyzeCovariates The following object is masked from package stats
gravatar for esraesmeray1990
5 months ago by
Izmir Biomedicine and Genome Center
esraesmeray199010 wrote:

Hi I am tryin to use gatk AnalyzeCovariates and compare outpıuts of 2 pass using folloging code:

gatk AnalyzeCovariates --before-report-file sample_addRG.recal_pass1.tabl --after-report-file sample_addRG.recal_pass2.tabl --plots-report-file sample.output.pdf

But it gives following error. I tried so many ways but still taking the same error. So please help me.

Stdout: Stderr: Attaching package: ‘gplots’

The following object is masked from ‘package:stats’:


Hata: Can't find `stat` called "identity"
gatk stats analyzecovariates R • 188 views
ADD COMMENTlink written 5 months ago by esraesmeray199010
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1000 users visited in the last hour