Question: gatk AnalyzeCovariates The following object is masked from package stats
0
gravatar for esraesmeray1990
5 months ago by
Izmir Biomedicine and Genome Center
esraesmeray199010 wrote:

Hi I am tryin to use gatk AnalyzeCovariates and compare outpıuts of 2 pass using folloging code:

gatk AnalyzeCovariates --before-report-file sample_addRG.recal_pass1.tabl --after-report-file sample_addRG.recal_pass2.tabl --plots-report-file sample.output.pdf

But it gives following error. I tried so many ways but still taking the same error. So please help me.

Stdout: Stderr: Attaching package: ‘gplots’

The following object is masked from ‘package:stats’:

    lowess

Hata: Can't find `stat` called "identity"
gatk stats analyzecovariates R • 188 views
ADD COMMENTlink written 5 months ago by esraesmeray199010
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1000 users visited in the last hour