User: badredda

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badredda10
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Posts by badredda

<prev • 3 results • page 1 of 1 • next >
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CHASM vs VEST
... Hello dear Biostars community, I would like to use CRAVAT(https://www.cravat.us/) tools VEST and CHASM for somatic functional annotation but I can't figure out the difference between the two tools. Both of the tools uses a machine learning method and I know that VEST include also indels (which CHAS ...
chasm vest cravat functional somatic annotation written 20 days ago by badredda10
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Comment: C: Intersection of a BED genes with multiple VCFs: report only if at least N inters
... @Alex Reynolds Thanks for the help ! I will try it asap ! ...
written 4 months ago by badredda10
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Intersection of a BED genes with multiple VCFs: report only if at least N intersection.
... Hello everyone, Here's my problem: I have multiple VCF outputs that I have obtained using MuTect2 for 18 patients in total from Whole Exome Sequencing (WES/WXS) (so 18 VCF files). I have a BED file which has the list of all genes. FYI, MuTect2 reports single variants and INDELS in the VCF. So, if ...
bedtools vcf wes bed intersection written 4 months ago by badredda10 • updated 4 months ago by Alex Reynolds20k

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