User: badredda

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badredda130
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Posts by badredda

<prev • 51 results • page 1 of 6 • next >
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What are the min/max of the MaxEntScan software ?
... The [link][1] that I presume should have explain the min/max values interpretation of the MaxEntScan software for splicing regions is dead. That link tells you to go to that [link][2] but there is nothing that explains the scores. According to an [Ensembl issue][3], @ima23 states: > Hi Damian, & ...
maxentscan written 24 days ago by badredda130
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Any changes to the frequencies of gnomAD v2.1 liftover ?
... Dear community, I tried to look for any information on their website concerning my question. I would like to know if the gnomAD v2.1 liftover version (hg38) changes the frequency for a given mutation or its annotation from the original analysis (hg19). I speculate that the only changes made are the ...
hg38 gnomad liftovert hg19 written 8 weeks ago by badredda130
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
... thanks for your comment but unfortunately your answer doesn't help my case. ...
written 9 weeks ago by badredda130
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
... @WouterDeCoster I actually deleted it because it was a wrong answer ... the transcript version is that of Ensembl and not RefSeq... I am sorry for my inattention :( ...
written 9 weeks ago by badredda130
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
... thanks for reply but I tried that already, they don't have this option ...
written 9 weeks ago by badredda130
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Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37 ?
... Hello, Using Biomart, it is possible to obtain the matching RefSeq transcripts for GRCh38. I would like to know if there is a way to obtain that information for GRCh37. Thanks in advance. ...
ensembl genes refseq transcripts written 9 weeks ago by badredda130 • updated 9 weeks ago by Emily_Ensembl20k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
... Thank you for your advice. We have enough of storage. But it wouldn't be wise though to keep upgrading storage and spending money when we can find solutions to optimize compression, save money and time. ...
written 7 months ago by badredda130
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
... Thanks for the SPRING link. That's useful ! >How are you planning to use uncompressed fastq files to save space? I explained before: >I am not sure it is worth your time to mess with primary data (which should really be backed up as is). I am not altering the primary data in any way ... ju ...
written 7 months ago by badredda130
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Comment: C: Should the expression data be centered before PCA?
... Could you please fix the images ? ...
written 7 months ago by badredda130
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Comment: A: Move files that match the names on a list
... Assuming you are using a linux environment and your files starts with `sample_*` , you could do so: mv sample_* path/to/new/directory Assuming you have names like *_samplexxx_*: mv *_sample*_* path/to/new/directory ...
written 7 months ago by badredda130

Latest awards to badredda

Popular Question 9 weeks ago, created a question with more than 1,000 views. For Overlap of variants between CaVEMan and MuTect2 ?
Popular Question 10 months ago, created a question with more than 1,000 views. For Overlap of variants between CaVEMan and MuTect2 ?
Popular Question 10 months ago, created a question with more than 1,000 views. For [solved] SnpEff reports intron variants in exons ?
Popular Question 12 months ago, created a question with more than 1,000 views. For Using Circos plot to visualize RNA-seq data
Supporter 12 months ago, voted at least 25 times.
Popular Question 12 months ago, created a question with more than 1,000 views. For [solved] SnpEff reports intron variants in exons ?
Popular Question 14 months ago, created a question with more than 1,000 views. For [solved] SnpEff reports intron variants in exons ?

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