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Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
BaseRecalibrator mouse gatk
updated 8 weeks ago by • 0 • written 3.6 years ago by ▴ 240
1
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0
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6.6k
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Answer: Answer: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
3.6 years ago by 乙 ▴ 240
0
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0
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6.6k
views
Comment: Comment: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
3.6 years ago by 乙 ▴ 240
24
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24
replies
24k
views
8 follow
bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing methods by Illumina ?
bcl2fastq2 --use-bases-mask sequencing illumina
updated 4.1 years ago by ▴ 320 • written 7.1 years ago by ▴ 240
0
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1
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4.5k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.3 years ago by 乙 ▴ 240
11
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18
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4.5k
views
6 follow
Is there a tool to find the correct percentage of duplication levels in FastQ ?
sequencing fastq
updated 5.4 years ago by 154k • written 5.4 years ago by ▴ 240
0
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0
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4.5k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.4 years ago by 乙 ▴ 240
0
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1
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4.5k
views
Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.4 years ago by 乙 ▴ 240
0
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1
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4.5k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.4 years ago by 乙 ▴ 240
0
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1
reply
4.5k
views
Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.4 years ago by 乙 ▴ 240
0
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0
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1.4k
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Comment: C: Is it possible to get the Codons for an intron/splice mutation given the chromos
5.5 years ago by 乙 ▴ 240
0
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2
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1.4k
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Is it possible to get the Codons for an intron/splice mutation given the chromosome and position?
codons introns
5.5 years ago by 乙 ▴ 240
6
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5
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1.6k
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Is it possible to convert NC_ to NP_ for RefSeq ?
RefSeq
5.5 years ago by 乙 ▴ 240
0
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0
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1.6k
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
5.5 years ago by 乙 ▴ 240
0
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2
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1.6k
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
5.5 years ago by 乙 ▴ 240
1
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0
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2.3k
views
What are the min/max of the MaxEntScan software ?
maxentscan
5.7 years ago by 乙 ▴ 240
1
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0
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1.1k
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Any changes to the frequencies of gnomAD v2.1 liftover ?
gnomAD liftovert hg19 hg38
5.8 years ago by 乙 ▴ 240
4
votes
9
replies
3.4k
views
Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37 ?
Ensembl RefSeq transcripts genes
updated 5.8 years ago by 24k • written 5.8 years ago by ▴ 240
0
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1
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3.4k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.8 years ago by 乙 ▴ 240
0
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0
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3.4k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.8 years ago by 乙 ▴ 240
0
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1
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3.4k
views
Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.8 years ago by 乙 ▴ 240
0
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0
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3.5k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
6.3 years ago by 乙 ▴ 240
0
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1
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3.5k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
6.3 years ago by 乙 ▴ 240
0
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0
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5.8k
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Comment: C: Should the expression data be centered before PCA?
6.3 years ago by 乙 ▴ 240
0
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1
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3.5k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
6.3 years ago by 乙 ▴ 240
1
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2
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3.5k
views
Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
6.3 years ago by 乙 ▴ 240
4
votes
12
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3.5k
views
Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
decompression bcl2fastq2 fastq bcl raw
6.3 years ago by 乙 ▴ 240
13
votes
16
replies
5.7k
views
8 follow
RNA-seq: is there a way to get the variability between biological replicates ?
RNA-Seq
updated 6.6 years ago by 8.3k • written 6.6 years ago by ▴ 240
0
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0
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5.7k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
6.6 years ago by 乙 ▴ 240
0
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1
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5.7k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
6.6 years ago by 乙 ▴ 240
0
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1
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5.7k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
6.6 years ago by 乙 ▴ 240
1
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1
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5.7k
views
Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
6.6 years ago by 乙 ▴ 240
0
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0
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2.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
15
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14
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2.8k
views
RNA-seq: Is it worth to analyze case vs control separately to have a % similarity ?
RNA-Seq
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 240
0
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0
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2.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
1
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0
replies
2.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
0
votes
1
reply
2.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
0
votes
1
reply
2.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
0
votes
1
reply
2.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
6.6 years ago by 乙 ▴ 240
2
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1
reply
6.5k
views
Comment: C: What does CSQ means in a VCF file annotated by VEP ?
6.7 years ago by 乙 ▴ 240
15
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3
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6.5k
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What does CSQ means in a VCF file annotated by VEP ?
VCF CSQ
updated 6.7 years ago by 48k • written 6.7 years ago by ▴ 240
1
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1
reply
2.0k
views
Comment: C: MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
6.9 years ago by 乙 ▴ 240
1
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3
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2.0k
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MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
ensembl MySQL Assembly mapping
updated 6.9 years ago by 166k • written 6.9 years ago by ▴ 240
0
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1
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24k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
7.1 years ago by 乙 ▴ 240
5
votes
15
replies
11k
views
9 follow
Using Circos plot to visualize RNA-seq data
Circos RNA-Seq visualization
updated 7.3 years ago by ★ 3.4k • written 7.3 years ago by ▴ 240
1
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1
reply
11k
views
Comment: C: Using Circos plot to visualize RNA-seq data
7.3 years ago by 乙 ▴ 240
0
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1
reply
11k
views
Comment: C: Using Circos plot to visualize RNA-seq data
7.3 years ago by 乙 ▴ 240
0
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0
replies
11k
views
Comment: C: Using Circos plot to visualize RNA-seq data
7.3 years ago by 乙 ▴ 240
4
votes
7
replies
3.7k
views
HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
RNA-Seq HTSeq-count GenomicAlignments
7.5 years ago by 乙 ▴ 240
0
votes
1
reply
3.7k
views
Comment: C: HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R]
7.5 years ago by 乙 ▴ 240
64 results • Page 1 of 2
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