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1
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2
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1.9k
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Comment:
Comment: Is there anyone who downloaded Azimuth packges?
10 weeks ago by
jared.andrews07
★ 18k
0
votes
0
replies
1.2k
views
Comment:
Comment: ROSE called super-enhancers overlapping with promoters
10 weeks ago by
jared.andrews07
★ 18k
0
votes
2
replies
1.2k
views
Comment:
Comment: DEseq2 on expected counts
10 weeks ago by
jared.andrews07
★ 18k
0
votes
1
reply
2.0k
views
Comment:
Comment: How get density plot TSS region for genes of interest
11 weeks ago by
jared.andrews07
★ 18k
0
votes
1
reply
1.2k
views
Comment:
Comment: DEseq2 on expected counts
11 weeks ago by
jared.andrews07
★ 18k
0
votes
0
replies
456
views
Comment:
Comment: Pcoa plot
11 weeks ago by
jared.andrews07
★ 18k
2
votes
0
replies
456
views
Comment:
Comment: Pcoa plot
11 weeks ago by
jared.andrews07
★ 18k
1
vote
0
replies
277
views
Answer:
Answer: Creating a signature matrix using CibersortX
11 weeks ago by
jared.andrews07
★ 18k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
11 weeks ago by
jared.andrews07
★ 18k
1
vote
0
replies
1.1k
views
Comment:
Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
11 weeks ago by
jared.andrews07
★ 18k
0
votes
1
reply
1.1k
views
Comment:
Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
11 weeks ago by
jared.andrews07
★ 18k
0
votes
0
replies
399
views
Comment:
Comment: Approaches to validate hits from CRISPR-screen in mice
12 weeks ago by
jared.andrews07
★ 18k
1
vote
2
replies
1.1k
views
Answer:
Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
12 weeks ago by
jared.andrews07
★ 18k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
12 weeks ago by
jared.andrews07
★ 18k
0
votes
1
reply
399
views
Answer:
Answer: Approaches to validate hits from CRISPR-screen in mice
12 weeks ago by
jared.andrews07
★ 18k
1
vote
0
replies
14k
views
Comment:
Comment: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
3 months ago by
jared.andrews07
★ 18k
2
votes
0
replies
343
views
Answer:
Answer: Is ComBat not able to to handle only two batches? What are good alternatives?
3 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
563
views
Comment:
Comment: DESeq2 results vs. shrinkage results
3 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
733
views
Comment:
Comment: Grammar of Graphics for Heatmap
3 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
507
views
Comment:
Comment: Percentage Problem
3 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
507
views
Answer:
Answer: Percentage Problem
3 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
413
views
Answer:
Answer: Suggestions for resource for running R training
3 months ago by
jared.andrews07
★ 18k
2
votes
1
reply
479
views
Answer:
Answer: Why Are There Differences in RNA-seq Results?
3 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
581
views
Comment:
Comment: Mageck RRA is listing negative controls as high fold change in the gene summary
3 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
581
views
Answer:
Answer: Mageck RRA is listing negative controls as high fold change in the gene summary
3 months ago by
jared.andrews07
★ 18k
2
votes
2
replies
564
views
Comment:
Comment: How to account for total number of cells when aggregating for pseudobulk?
4 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
402
views
Comment:
Comment: error in CIBERSORTx
4 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
304
views
Answer:
Answer: Differential expression bias in Seurat
4 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
406
views
Comment:
Comment: single cell RNA sequencing and mitochondrial percent
4 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
813
views
Comment:
Comment: How to identify cell identities in mixed scRNA-seq using mutational signatures f
4 months ago by
jared.andrews07
★ 18k
2
votes
1
reply
813
views
Answer:
Answer: How to identify cell identities in mixed scRNA-seq using mutational signatures f
4 months ago by
jared.andrews07
★ 18k
2
votes
1
reply
400
views
Answer:
Answer: Understanding dimred in scater for scRNASeq
4 months ago by
jared.andrews07
★ 18k
2
votes
1
reply
822
views
Answer:
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
4 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
600
views
Comment:
Comment: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
4 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
600
views
Comment:
Comment: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
4 months ago by
jared.andrews07
★ 18k
2
votes
1
reply
600
views
Answer:
Answer: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
4 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
838
views
Answer:
Answer: How to find transcription factors list?
4 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
524
views
Answer:
Answer: Seurat object with multiple PCAs/UMAPs from different assays
4 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
577
views
Comment:
Comment: Is there a common acceptance criteria for sample contamination?
5 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
770
views
Comment:
Comment: Pseudobulking per patient
5 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
520
views
Answer:
Answer: gProfiler vs Panther_go in overrepresentation pathways R analysis
5 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
770
views
Answer:
Answer: Pseudobulking per patient
5 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
577
views
Comment:
Comment: Is there a common acceptance criteria for sample contamination?
5 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
503
views
Answer:
Answer: InferCNV results interpretation
5 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
689
views
Comment:
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
5 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
689
views
Answer:
Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
5 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
480
views
Answer:
Answer: Facing problem with single cell rna seq annotation using singleR
updated 4 months ago by
Ram
44k • written 5 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
1.2k
views
Comment:
Comment: Harmony integration group.by.var parameter
5 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
1.2k
views
Comment:
Comment: Harmony integration group.by.var parameter
5 months ago by
jared.andrews07
★ 18k
1
vote
2
replies
1.2k
views
Answer:
Answer: Harmony integration group.by.var parameter
5 months ago by
jared.andrews07
★ 18k
1,565 results • Page
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