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Answer: Answer: How do I know if I'm overcorrecting my single cell data
18 months ago by jared.andrews07 ★ 16k
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2.2k
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Answer: Answer: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by jared.andrews07 ★ 16k
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547
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Answer: Answer: Adjusting batch effects for known cell types and applying this transformation to
18 months ago by jared.andrews07 ★ 16k
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1.5k
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Answer: Answer: How to open/work with wig or tdf files
18 months ago by jared.andrews07 ★ 16k
4
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1
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1.4k
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Answer: Answer: No DEGs (adjP 0.99) but GSEA has significant adj p values and enriched pathways
19 months ago by jared.andrews07 ★ 16k
2
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1
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1.5k
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Answer: Answer: mouse+human cells in 10x scRNA-seq
19 months ago by jared.andrews07 ★ 16k
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0
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1.7k
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Answer: Answer: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
19 months ago by jared.andrews07 ★ 16k
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989
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Answer: Answer: Help with plotting DEG-specific heatmap
20 months ago by jared.andrews07 ★ 16k
3
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1
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561
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Answer: Answer: Why we perform coldata dataframe in normalization with DESeq2 on R?
20 months ago by jared.andrews07 ★ 16k
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1.1k
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Answer: Answer: Number of cells in each clusters
20 months ago by jared.andrews07 ★ 16k
3
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1.4k
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Answer: Answer: Obtaining p-value and fold-change from a table
21 months ago by jared.andrews07 ★ 16k
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1.6k
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Answer: Answer: Normalize Bimodal Distribution
21 months ago by jared.andrews07 ★ 16k
2
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1
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938
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Answer: Answer: Relative log expression normalization without negative values
21 months ago by jared.andrews07 ★ 16k
4
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1.6k
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Answer: Answer: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by jared.andrews07 ★ 16k
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725
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Answer: Answer: Clustering analysis for scRNA-seq
21 months ago by jared.andrews07 ★ 16k
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2
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914
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Answer: Answer: Logfold change
22 months ago by jared.andrews07 ★ 16k
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1.1k
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Answer: Answer: Exploring batch effects in RNA-seq data with plotPCA
22 months ago by jared.andrews07 ★ 16k
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0
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1.3k
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Answer: Answer: RNA-seq Heatmaps based off pathways
22 months ago by jared.andrews07 ★ 16k
3
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1
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2.6k
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Answer: Answer: What is the command to download GTF from NCBI
22 months ago by jared.andrews07 ★ 16k
1
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0
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453
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Answer: Answer: How to do differential expressions in R from scRNAseq count files after scaling
22 months ago by jared.andrews07 ★ 16k
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1
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1.0k
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Answer: Answer: interpretation of CNVKIT plot
22 months ago by jared.andrews07 ★ 16k
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0
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1.6k
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Answer: Answer: analyzing a single cell and searching for a specific gene using single cell data
23 months ago by jared.andrews07 ★ 16k
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1.1k
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Answer: Answer: comparisons between 2 ChIP-seq datasets
24 months ago by jared.andrews07 ★ 16k
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0
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953
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Answer: Answer: Project ideas
2.0 years ago by jared.andrews07 ★ 16k
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0
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622
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Answer: Answer: Enrichment analysis and GSEA
2.0 years ago by jared.andrews07 ★ 16k
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1.2k
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Answer: Answer: can i take promoter upstream 2kb from tss ?
2.0 years ago by jared.andrews07 ★ 16k
0
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1
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849
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Answer: Answer: InteractiveComplexHeatmap on DESeq2 object with more than 2 groups
2.0 years ago by jared.andrews07 ★ 16k
1
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1
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777
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Answer: Answer: Sailfish - No <install_dir>/bin folder after installation
2.0 years ago by jared.andrews07 ★ 16k
2
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0
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1.2k
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Answer: Answer: How to normalize bulk and scRNA-seq data in order to compare them
2.0 years ago by jared.andrews07 ★ 16k
2
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2
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2.0k
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Answer: Answer: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.0 years ago by jared.andrews07 ★ 16k
0
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2
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1.6k
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Answer: Answer: Help with massive SRA download of mixed file types (SE fastq, PE fastq, bam)
2.1 years ago by jared.andrews07 ★ 16k
3
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0
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654
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Answer: Answer: Why does DiffBind use the count of reads that fall within peaks?
2.1 years ago by jared.andrews07 ★ 16k
4
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1
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1.4k
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Answer: Answer: Difference between number of cells predicted by two different versions of cellra
2.1 years ago by jared.andrews07 ★ 16k
0
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1
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716
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Answer: Answer: DB SNP, how to download database?
2.1 years ago by jared.andrews07 ★ 16k
3
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0
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495
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Answer: Answer: Why are methylation values bimodal rather than trimodal?
2.1 years ago by jared.andrews07 ★ 16k
3
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1
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779
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Answer: Answer: Background choice for GO analysis of RNA-Seq
2.2 years ago by jared.andrews07 ★ 16k
0
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1
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1.3k
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Answer: Answer: Two peak in histogram before single cell RNA-seq QC & Filtering
2.2 years ago by jared.andrews07 ★ 16k
0
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1
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1.0k
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Answer: Answer: DiffBind dba.normalize error using spikein reads
2.2 years ago by jared.andrews07 ★ 16k
2
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0
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2.6k
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Answer: Answer: How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
2.2 years ago by jared.andrews07 ★ 16k
0
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0
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1.0k
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Answer: Answer: Office computers on Windows
2.2 years ago by jared.andrews07 ★ 16k
2
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1
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848
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Answer: Answer: promoters hg38 coordinates
2.2 years ago by jared.andrews07 ★ 16k
3
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1
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1.5k
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Answer: Answer: Transcription factors database
2.3 years ago by jared.andrews07 ★ 16k
2
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0
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672
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Answer: Answer: Cell type identification in scRNAseq
2.3 years ago by jared.andrews07 ★ 16k
1
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1
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1.1k
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Answer: Answer: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by jared.andrews07 ★ 16k
0
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1
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621
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Answer: Answer: gene numbers after tximport summarizeToGene
2.3 years ago by jared.andrews07 ★ 16k
0
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0
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1.6k
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Answer: Answer: Unsupervised hierarchical clustering of DEG in Rstudio
2.3 years ago by jared.andrews07 ★ 16k
2
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1
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1.1k
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Answer: Answer: Identifying Immune Cell Subsets - Favour Reference-Based or Marker-Based Label
2.3 years ago by jared.andrews07 ★ 16k
1
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0
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2.4k
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Answer: Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
2.3 years ago by jared.andrews07 ★ 16k
2
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2
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3.3k
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Answer: Answer: Combining multiple 10x scRNAseq datasets
2.3 years ago by jared.andrews07 ★ 16k
0
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0
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740
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Answer: Answer: Single cell Cluster based only perticular marker gene
2.3 years ago by jared.andrews07 ★ 16k
605 results • Page 3 of 13
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