Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: janhuang.cn

gravatar for janhuang.cn
janhuang.cn • 120
Reputation:
120
Status:
Trusted
Location:
Last seen:
2 weeks, 1 day ago
Joined:
1 year, 6 months ago
Email:
j**********@gmail.com

Posts by janhuang.cn

<prev • 49 results • page 1 of 5 • next >
0
votes
1
answer
145
views
1
answers
Comment: C: Illumina Human Methylation EPIC array annotation
... Thanks. The column heading says "UCSC_RefGene_Name: Target gene name(s), from the UCSC database. *Note: multiple listings of the same gene name indicate splice variants". But is there any information on how they (UCSC or Illumina) annotate it? For example, cg18478105 (chr20:61847650) was on YTHDF1 ( ...
written 5 weeks ago by janhuang.cn • 120
0
votes
1
answer
145
views
1
answer
Illumina Human Methylation EPIC array annotation
... I used the R package *IlluminaHumanMethylationEPICanno.ilm10b4.hg19* to extract the annotation of the CpGs in my data. I wonder if there is any documentation on how Illumina define these annotations? Is it solely based on the distance from the loci? Thank you very much. ...
dna methylation epic array annotation written 5 weeks ago by janhuang.cn • 120 • updated 5 weeks ago by Charles Warden ♦ 5.9k
0
votes
1
answer
869
views
1
answers
Comment: C: Infinium Methylation SNP
... Thank you very much ...
written 15 months ago by janhuang.cn • 120
0
votes
1
answer
869
views
1
answers
Comment: C: Infinium Methylation SNP
... How is full capture sequence defined? ...
written 15 months ago by janhuang.cn • 120
0
votes
1
answer
869
views
1
answer
Infinium Methylation SNP
... I am using `IlluminaHumanMethylation450kanno.ilmn12.hg19` package to obtain the SNP-associated probe information (probe_rs, probe_maf). The [reference manual][1] says > In addition to the SNP information provided by Illumina, we have added independent information on the overlap of the 450k wit ...
overlap snp cpg written 15 months ago by janhuang.cn • 120 • updated 15 months ago by andrew.j.skelton73 ♦ 5.5k
2
votes
1
answer
794
views
1
answers
Comment: C: SNPs that are merged in dbSNP
... Using the "Send to" function to download is very slow. RsMergeArch.bcp.gz is available in the dbSNP FTP folder: [ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/data/organism_data/][1] [1]: ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/data/organism_data/ ...
written 15 months ago by janhuang.cn • 120
0
votes
2
answers
2.6k
views
2
answers
Comment: C: Downloading synonyms for dbSNP rsids
... The above link is expired. The RsMergeArch.bcp.gz is now available here: [ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/data/organism_data/][1] [1]: ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/data/organism_data/ ...
written 15 months ago by janhuang.cn • 120
1
vote
1
answer
794
views
1
answers
Comment: C: SNPs that are merged in dbSNP
... Thank you very much. ...
written 15 months ago by janhuang.cn • 120
7
votes
1
answer
794
views
1
answer
SNPs that are merged in dbSNP
... I am analysing the 1000G VCF files, rs80314515 is not available in the VCF, but rs10204648 is available. dbSNP returns this message when I search rs80314515 ([https://www.ncbi.nlm.nih.gov/snp/?term=rs80314515][1]) rs80314515 has merged into rs10204648 I wonder if there is a data base about ...
1000g vcf merge snp written 15 months ago by janhuang.cn • 120 • updated 15 months ago by Kevin Blighe ♦ 35k
0
votes
3
answers
2.6k
views
3
answers
Comment: C: Extract the SNP list of a VCF file
... Thank you very much. ...
written 15 months ago by janhuang.cn • 120

Latest awards to janhuang.cn

Popular Question 14 months ago, created a question with more than 1,000 views. For Fail to open file in plink
Popular Question 14 months ago, created a question with more than 1,000 views. For Extract the SNP list of a VCF file
Popular Question 14 months ago, created a question with more than 1,000 views. For Editing vcf file using bcftools
Popular Question 14 months ago, created a question with more than 1,000 views. For Obtain the LD matrix from a list of SNP
Popular Question 14 months ago, created a question with more than 1,000 views. For Remove duplicate SNPs only based on SNP ID in bcftools
Popular Question 14 months ago, created a question with more than 1,000 views. For Keep one SNP for duplicate SNPs
Popular Question 14 months ago, created a question with more than 1,000 views. For ld matrix in plink
Popular Question 14 months ago, created a question with more than 1,000 views. For Duplicate ID in bed file
Popular Question 14 months ago, created a question with more than 1,000 views. For plink calculating LD using R2 command
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1872 users visited in the last hour