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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
4.1 years ago by janhuang.cn ▴ 190
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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
4.1 years ago by janhuang.cn ▴ 190
0
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5
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2.4k
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How to extract proxy SNPs using 1000G vcf for a list of SNPs
plink proxy SNP 1000G vcftools
updated 4.1 years ago by 10.0k • written 4.1 years ago by ▴ 190
5
votes
3
replies
11k
views
Fail to open file in plink
ped plink
updated 4.1 years ago by 11k • written 5.6 years ago by ▴ 190
0
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1
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3.5k
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Comment: C: Illumina Human Methylation EPIC array annotation
4.3 years ago by janhuang.cn ▴ 190
0
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3
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3.5k
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Illumina Human Methylation EPIC array annotation
DNA methylation Annotation EPIC array
updated 4.3 years ago by 8.2k • written 4.3 years ago by ▴ 190
6
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6
replies
10k
views
6 follow
Duplicate ID in bed file
bed duplicate id
updated 16 months ago by ▴ 40 • written 5.6 years ago by ▴ 190
3
votes
14
replies
12k
views
Obtain the LD matrix from a list of SNP
SNP LD
updated 4.9 years ago by 11k • written 5.7 years ago by ▴ 190
0
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8
replies
3.6k
views
Keep one SNP for duplicate SNPs
duplicate SNP
updated 5.2 years ago by 20 • written 5.6 years ago by ▴ 190
0
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0
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2.6k
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Comment: C: Infinium Methylation SNP
5.4 years ago by janhuang.cn ▴ 190
0
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1
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2.6k
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Comment: C: Infinium Methylation SNP
5.4 years ago by janhuang.cn ▴ 190
2
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6
replies
2.6k
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Infinium Methylation SNP
SNP cpg overlap
updated 5.4 years ago by 6.5k • written 5.4 years ago by ▴ 190
2
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0
replies
2.8k
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Comment: C: SNPs that are merged in dbSNP
5.5 years ago by janhuang.cn ▴ 190
0
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2
replies
4.6k
views
Comment: Comment: Downloading synonyms for dbSNP rsids
updated 11 months ago by 38k • written 5.5 years ago by ▴ 190
1
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1
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2.8k
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Comment: C: SNPs that are merged in dbSNP
5.5 years ago by janhuang.cn ▴ 190
7
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3
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2.8k
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SNPs that are merged in dbSNP
SNP 1000g vcf merge
updated 5.5 years ago by 84k • written 5.5 years ago by ▴ 190
0
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0
replies
12k
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Comment: C: Extract the SNP list of a VCF file
5.5 years ago by janhuang.cn ▴ 190
0
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1
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12k
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Comment: C: Extract the SNP list of a VCF file
5.5 years ago by janhuang.cn ▴ 190
0
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1
reply
12k
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Comment: C: Extract the SNP list of a VCF file
5.5 years ago by janhuang.cn ▴ 190
14
votes
14
replies
12k
views
Extract the SNP list of a VCF file
VCF SNP
updated 17 months ago by 153k • written 5.5 years ago by ▴ 190
0
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1
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12k
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Comment: C: Extract the SNP list of a VCF file
5.5 years ago by janhuang.cn ▴ 190
1
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0
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2.4k
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Comment: C: loadling bcf2 file in plink
5.5 years ago by janhuang.cn ▴ 190
0
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1
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2.4k
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Comment: C: loadling bcf2 file in plink
5.5 years ago by janhuang.cn ▴ 190
2
votes
4
replies
2.4k
views
loadling bcf2 file in plink
plink bcf
updated 5.5 years ago by 84k • written 5.5 years ago by ▴ 190
2
votes
1
reply
9.6k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
5.5 years ago by janhuang.cn ▴ 190
3
votes
5
replies
7.9k
views
ld matrix in plink
matrix ld
updated 5.5 years ago by ▴ 380 • written 5.6 years ago by ▴ 190
1
vote
1
reply
9.6k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
5.5 years ago by janhuang.cn ▴ 190
19
votes
12
replies
9.6k
views
Remove duplicate SNPs only based on SNP ID in bcftools
SNP duplicate bcftools
updated 15 months ago by ▴ 10 • written 5.5 years ago by ▴ 190
0
votes
1
reply
9.6k
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Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
5.5 years ago by janhuang.cn ▴ 190
0
votes
1
reply
9.6k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
5.5 years ago by janhuang.cn ▴ 190
0
votes
1
reply
9.6k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
5.5 years ago by janhuang.cn ▴ 190
0
votes
0
replies
8.7k
views
Comment: C: plink calculating LD using R2 command
5.5 years ago by janhuang.cn ▴ 190
1
vote
2
replies
8.7k
views
plink calculating LD using R2 command
ld plink r2
updated 5.5 years ago by ▴ 280 • written 5.5 years ago by ▴ 190
0
votes
2
replies
1.6k
views
Multiple USCS_gene_name for one CpG
cpg methylation annotation
updated 24 months ago by • 0 • written 5.5 years ago by ▴ 190
0
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0
replies
5.7k
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Comment: C: Editing vcf file using bcftools
5.6 years ago by janhuang.cn ▴ 190
0
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1
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5.7k
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Comment: C: Editing vcf file using bcftools
5.6 years ago by janhuang.cn ▴ 190
0
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1
reply
5.7k
views
Comment: C: Editing vcf file using bcftools
5.6 years ago by janhuang.cn ▴ 190
0
votes
6
replies
5.7k
views
Editing vcf file using bcftools
bcftools vcf subset SNP maf
5.6 years ago by janhuang.cn ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Keep one SNP for duplicate SNPs
5.6 years ago by janhuang.cn ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Keep one SNP for duplicate SNPs
5.6 years ago by janhuang.cn ▴ 190
0
votes
2
replies
3.6k
views
Comment: C: Keep one SNP for duplicate SNPs
5.6 years ago by janhuang.cn ▴ 190
0
votes
0
replies
7.9k
views
Comment: C: ld matrix in plink
5.6 years ago by janhuang.cn ▴ 190
0
votes
1
reply
7.9k
views
Comment: C: ld matrix in plink
5.6 years ago by janhuang.cn ▴ 190
0
votes
1
reply
10k
views
Comment: C: Duplicate ID in bed file
5.6 years ago by janhuang.cn ▴ 190
0
votes
1
reply
11k
views
Comment: C: Fail to open file in plink
5.6 years ago by janhuang.cn ▴ 190
0
votes
0
replies
12k
views
Comment: C: Obtain the LD matrix from a list of SNP
5.7 years ago by janhuang.cn ▴ 190
0
votes
0
replies
12k
views
Comment: C: Obtain the LD matrix from a list of SNP
5.7 years ago by janhuang.cn ▴ 190
0
votes
1
reply
12k
views
Comment: C: Obtain the LD matrix from a list of SNP
5.7 years ago by janhuang.cn ▴ 190
0
votes
1
reply
12k
views
Comment: C: Obtain the LD matrix from a list of SNP
5.7 years ago by janhuang.cn ▴ 190
0
votes
1
reply
12k
views
Comment: C: Obtain the LD matrix from a list of SNP
5.7 years ago by janhuang.cn ▴ 190
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