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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
6.7 years ago by janhuang.cn ▴ 250
0
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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
6.7 years ago by janhuang.cn ▴ 250
0
votes
5
replies
3.6k
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How to extract proxy SNPs using 1000G vcf for a list of SNPs
plink proxy SNP 1000G vcftools
updated 6.7 years ago by 11k • written 6.7 years ago by ▴ 250
5
votes
3
replies
16k
views
Fail to open file in plink
ped plink
updated 6.7 years ago by 12k • written 8.3 years ago by ▴ 250
0
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1
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5.9k
views
Comment: C: Illumina Human Methylation EPIC array annotation
6.9 years ago by janhuang.cn ▴ 250
0
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3
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5.9k
views
Illumina Human Methylation EPIC array annotation
DNA methylation Annotation EPIC array
updated 6.9 years ago by 8.3k • written 6.9 years ago by ▴ 250
9
votes
6
replies
14k
views
6 follow
Duplicate ID in bed file
bed duplicate id
updated 3.9 years ago by ▴ 40 • written 8.2 years ago by ▴ 250
3
votes
14
replies
17k
views
Obtain the LD matrix from a list of SNP
SNP LD
updated 7.5 years ago by 12k • written 8.3 years ago by ▴ 250
0
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8
replies
5.6k
views
Keep one SNP for duplicate SNPs
duplicate SNP
updated 7.8 years ago by 20 • written 8.2 years ago by ▴ 250
0
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0
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3.7k
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Comment: C: Infinium Methylation SNP
8.0 years ago by janhuang.cn ▴ 250
0
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1
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3.7k
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Comment: C: Infinium Methylation SNP
8.0 years ago by janhuang.cn ▴ 250
2
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6
replies
3.7k
views
Infinium Methylation SNP
SNP cpg overlap
updated 8.0 years ago by 6.7k • written 8.0 years ago by ▴ 250
3
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0
replies
4.6k
views
Comment: C: SNPs that are merged in dbSNP
8.1 years ago by janhuang.cn ▴ 250
0
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2
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6.2k
views
Comment: Comment: Downloading synonyms for dbSNP rsids
updated 3.6 years ago by 45k • written 8.1 years ago by ▴ 250
1
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1
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4.6k
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Comment: C: SNPs that are merged in dbSNP
8.1 years ago by janhuang.cn ▴ 250
10
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3
replies
4.6k
views
SNPs that are merged in dbSNP
SNP 1000g vcf merge
updated 8.1 years ago by 89k • written 8.1 years ago by ▴ 250
0
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0
replies
17k
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Comment: C: Extract the SNP list of a VCF file
8.1 years ago by janhuang.cn ▴ 250
0
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1
reply
17k
views
Comment: C: Extract the SNP list of a VCF file
8.1 years ago by janhuang.cn ▴ 250
0
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1
reply
17k
views
Comment: C: Extract the SNP list of a VCF file
8.1 years ago by janhuang.cn ▴ 250
15
votes
14
replies
17k
views
Extract the SNP list of a VCF file
VCF SNP
updated 4.0 years ago by 166k • written 8.1 years ago by ▴ 250
0
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1
reply
17k
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Comment: C: Extract the SNP list of a VCF file
8.1 years ago by janhuang.cn ▴ 250
1
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0
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3.7k
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Comment: C: loadling bcf2 file in plink
8.1 years ago by janhuang.cn ▴ 250
0
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1
reply
3.7k
views
Comment: C: loadling bcf2 file in plink
8.1 years ago by janhuang.cn ▴ 250
2
votes
4
replies
3.7k
views
loadling bcf2 file in plink
plink bcf
updated 8.1 years ago by 89k • written 8.1 years ago by ▴ 250
2
votes
1
reply
14k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
8.1 years ago by janhuang.cn ▴ 250
3
votes
5
replies
12k
views
ld matrix in plink
matrix ld
updated 8.1 years ago by ▴ 410 • written 8.2 years ago by ▴ 250
1
vote
1
reply
14k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
8.1 years ago by janhuang.cn ▴ 250
23
votes
12
replies
14k
views
Remove duplicate SNPs only based on SNP ID in bcftools
SNP duplicate bcftools
updated 3.9 years ago by ▴ 10 • written 8.1 years ago by ▴ 250
0
votes
1
reply
14k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
8.1 years ago by janhuang.cn ▴ 250
0
votes
1
reply
14k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
8.1 years ago by janhuang.cn ▴ 250
0
votes
1
reply
14k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
8.1 years ago by janhuang.cn ▴ 250
0
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0
replies
12k
views
Comment: C: plink calculating LD using R2 command
8.1 years ago by janhuang.cn ▴ 250
1
vote
2
replies
12k
views
plink calculating LD using R2 command
ld plink r2
updated 8.1 years ago by ▴ 280 • written 8.1 years ago by ▴ 250
0
votes
2
replies
2.2k
views
Multiple USCS_gene_name for one CpG
cpg methylation annotation
updated 4.6 years ago by • 0 • written 8.1 years ago by ▴ 250
0
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0
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8.0k
views
Comment: C: Editing vcf file using bcftools
8.2 years ago by janhuang.cn ▴ 250
0
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1
reply
8.0k
views
Comment: C: Editing vcf file using bcftools
8.2 years ago by janhuang.cn ▴ 250
0
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1
reply
8.0k
views
Comment: C: Editing vcf file using bcftools
8.2 years ago by janhuang.cn ▴ 250
0
votes
6
replies
8.0k
views
Editing vcf file using bcftools
bcftools vcf subset SNP maf
8.2 years ago by janhuang.cn ▴ 250
0
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1
reply
5.6k
views
Comment: C: Keep one SNP for duplicate SNPs
8.2 years ago by janhuang.cn ▴ 250
0
votes
1
reply
5.6k
views
Comment: C: Keep one SNP for duplicate SNPs
8.2 years ago by janhuang.cn ▴ 250
0
votes
2
replies
5.6k
views
Comment: C: Keep one SNP for duplicate SNPs
8.2 years ago by janhuang.cn ▴ 250
0
votes
0
replies
12k
views
Comment: C: ld matrix in plink
8.2 years ago by janhuang.cn ▴ 250
0
votes
1
reply
12k
views
Comment: C: ld matrix in plink
8.2 years ago by janhuang.cn ▴ 250
0
votes
1
reply
14k
views
Comment: C: Duplicate ID in bed file
8.2 years ago by janhuang.cn ▴ 250
0
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1
reply
16k
views
Comment: C: Fail to open file in plink
8.3 years ago by janhuang.cn ▴ 250
0
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0
replies
17k
views
Comment: C: Obtain the LD matrix from a list of SNP
8.3 years ago by janhuang.cn ▴ 250
0
votes
0
replies
17k
views
Comment: C: Obtain the LD matrix from a list of SNP
8.3 years ago by janhuang.cn ▴ 250
0
votes
1
reply
17k
views
Comment: C: Obtain the LD matrix from a list of SNP
8.3 years ago by janhuang.cn ▴ 250
0
votes
1
reply
17k
views
Comment: C: Obtain the LD matrix from a list of SNP
8.3 years ago by janhuang.cn ▴ 250
0
votes
1
reply
17k
views
Comment: C: Obtain the LD matrix from a list of SNP
8.3 years ago by janhuang.cn ▴ 250
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