Question: Fail to open file in plink
1
gravatar for janhuang.cn
19 months ago by
janhuang.cn140
janhuang.cn140 wrote:

I am new to plink, and I am following this tutorial:

But I cannot even open the file.

I am using a PLINK 1.9 on Windows, 64 bit. I have put the hapmap1.ped and hapmap1.map in the folder which I store PLINK.

I used the below command to add the folder to the path

path = %PATH%;C:\Users\jh3903\Desktop\plink_win64

And then when I run the below command, it return my PLINK version is v1.9b04.5 64-bit (25Jul2017) and with some other information

plink

I then run the below command

plink --file hapmap1

This is the error I got says

16306 MB RAM detected; reserving 8153 MB for main workspace.
Error: Failed to open hapmap1.map

Does anyone have a clue about this?

ped plink • 2.1k views
ADD COMMENTlink modified 29 days ago by zx87546.8k • written 19 months ago by janhuang.cn140
2
gravatar for RamRS
19 months ago by
RamRS20k
Houston, TX
RamRS20k wrote:

Does the file hapmap1.map exist in the directory you're running the plink command in? It should be in your working directory, not in the directory that has the plink executable.

ADD COMMENTlink written 19 months ago by RamRS20k

I see. Thank you. I put the hapmap1.map in the plink folder.

ADD REPLYlink written 19 months ago by janhuang.cn140
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