Question: Fail to open file in plink
1
gravatar for janhuang.cn
2.2 years ago by
janhuang.cn150
janhuang.cn150 wrote:

I am new to plink, and I am following this tutorial:

But I cannot even open the file.

I am using a PLINK 1.9 on Windows, 64 bit. I have put the hapmap1.ped and hapmap1.map in the folder which I store PLINK.

I used the below command to add the folder to the path

path = %PATH%;C:\Users\jh3903\Desktop\plink_win64

And then when I run the below command, it return my PLINK version is v1.9b04.5 64-bit (25Jul2017) and with some other information

plink

I then run the below command

plink --file hapmap1

This is the error I got says

16306 MB RAM detected; reserving 8153 MB for main workspace.
Error: Failed to open hapmap1.map

Does anyone have a clue about this?

ped plink • 3.2k views
ADD COMMENTlink modified 8 months ago by zx87548.2k • written 2.2 years ago by janhuang.cn150
2
gravatar for RamRS
2.2 years ago by
RamRS24k
Houston, TX
RamRS24k wrote:

Does the file hapmap1.map exist in the directory you're running the plink command in? It should be in your working directory, not in the directory that has the plink executable.

ADD COMMENTlink written 2.2 years ago by RamRS24k

I see. Thank you. I put the hapmap1.map in the plink folder.

ADD REPLYlink written 2.2 years ago by janhuang.cn150
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