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Comment: C: htseq for specific features
9.4 years ago by GouthamAtla 12k
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1
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2.6k
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Comment: C: RNAseq continuous variable outliers
9.4 years ago by GouthamAtla 12k
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1
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2.3k
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Answer: C: Is it possible to run an Allele Specific Expression (ASE) experiment with just R
9.4 years ago by GouthamAtla 12k
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0
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2.7k
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Comment: C: What is the difference between using "-f 0.5 -r" and "-f 0.5 -F 0.5" in bedtools
9.4 years ago by GouthamAtla 12k
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1
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2.7k
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Comment: C: What is the difference between using "-f 0.5 -r" and "-f 0.5 -F 0.5" in bedtools
9.4 years ago by GouthamAtla 12k
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3
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3.5k
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Comment: C: Visualizing mutations burden vs. gene expression
9.4 years ago by GouthamAtla 12k
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0
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1.8k
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Answer: C: Seqmonk feature tab files in .dat format
9.4 years ago by GouthamAtla 12k
1
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2
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30k
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Comment: C: samtools bedcov vs. bedtools coverage
9.5 years ago by GouthamAtla 12k
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1
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4.5k
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Comment: C: Trimming adapters of Hiseq2000 pair end reads
9.5 years ago by GouthamAtla 12k
2
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0
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3.0k
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Comment: C: Could not find fasta record: CuffCompare & Cuffmerge
9.5 years ago by GouthamAtla 12k
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0
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1.8k
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Comment: C: Expdiff method in differential expression analysis
9.5 years ago by GouthamAtla 12k
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1
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1.5k
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Comment: C: Where my reputations ,question and answers went
9.5 years ago by GouthamAtla 12k
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1
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4.1k
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Comment: C: Extract 1M reads from paired end fastqs
9.5 years ago by GouthamAtla 12k
2
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0
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2.3k
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Answer: C: A Basic question regarding lncRNA identification pipeline.
9.5 years ago by GouthamAtla 12k
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1
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3.0k
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Answer: C: Extracting only paired reads from .bam
9.5 years ago by GouthamAtla 12k
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0
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3.7k
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Comment: C: HTSeq result, most genes have 0 count?
9.5 years ago by GouthamAtla 12k
2
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0
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4.6k
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Comment: C: which annotation I should for RNA-seq? Ensemble, USCS or refseq?
9.5 years ago by GouthamAtla 12k
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0
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3.2k
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Comment: C: non-exonic reads in RNAseq
9.5 years ago by GouthamAtla 12k
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0
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5.1k
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Comment: C: How to extract sequence from fasta file with specific coordinates?
9.5 years ago by GouthamAtla 12k
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1
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5.1k
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Answer: A: How to extract sequence from fasta file with specific coordinates?
9.5 years ago by GouthamAtla 12k
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1
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5.1k
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Comment: C: How to extract sequence from fasta file with specific coordinates?
9.5 years ago by GouthamAtla 12k
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1
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4.3k
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Comment: C: Estimating tumor purity from genomic data
9.5 years ago by GouthamAtla 12k
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0
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2.2k
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Comment: C: Average peak center of three peaks using pybedtools?
9.5 years ago by GouthamAtla 12k
1
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0
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5.1k
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Comment: C: aligning with bacterial genome
9.5 years ago by GouthamAtla 12k
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1
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5.5k
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Comment: C: fasta and bowtie index file download
9.5 years ago by GouthamAtla 12k
0
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0
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10k
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Comment: C: Unable to find Bowtie2 index
9.5 years ago by GouthamAtla 12k
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1
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10k
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Comment: C: Unable to find Bowtie2 index
9.5 years ago by GouthamAtla 12k
1
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1
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10k
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Answer: C: Unable to find Bowtie2 index
9.5 years ago by GouthamAtla 12k
1
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0
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2.6k
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Answer: A: Reading bam files and extratcing transcript from abm files in R
9.5 years ago by GouthamAtla 12k
1
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0
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2.4k
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Comment: C: Groseq data read count?
9.5 years ago by GouthamAtla 12k
1
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1
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2.3k
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Comment: C: Suggestions to measure differential expression of two transcripts
9.5 years ago by GouthamAtla 12k
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0
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5.5k
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Comment: C: WGCNA sequence of commands
9.5 years ago by GouthamAtla 12k
0
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1
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13k
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Comment: C: Convert 80 VCF to PED and MAP plink files
9.5 years ago by GouthamAtla 12k
0
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0
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2.7k
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Comment: C: Detecting the peaks from RNAseq data
9.5 years ago by GouthamAtla 12k
1
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1
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5.5k
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Comment: C: WGCNA sequence of commands
9.5 years ago by GouthamAtla 12k
2
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1
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11k
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Comment: C: BWA-MEM Vs BWA-ALN
9.5 years ago by GouthamAtla 12k
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0
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2.9k
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Comment: C: Splitting fastq file for mapping with tophat2
9.5 years ago by GouthamAtla 12k
0
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1
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5.5k
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Comment: C: WGCNA sequence of commands
9.5 years ago by GouthamAtla 12k
5
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0
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49k
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Answer: Answer: FPKM vs raw counts vs RPKM
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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3.0k
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Comment: C: Counting reads at a specific location
9.6 years ago by GouthamAtla 12k
0
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1
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3.4k
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Comment: C: How to divide the reference sequence into batches or chunks
9.6 years ago by GouthamAtla 12k
1
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1
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1.4k
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Comment: C: about tools working on VCF and BAM files
9.6 years ago by GouthamAtla 12k
1
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0
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4.6k
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Comment: C: What is Pathway Analysis?
9.6 years ago by GouthamAtla 12k
1
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1
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4.6k
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Comment: C: What is Pathway Analysis?
9.6 years ago by GouthamAtla 12k
0
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1
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4.5k
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Comment: C: EdgeR filter thresholds
9.6 years ago by GouthamAtla 12k
0
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0
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6.3k
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Comment: C: RNA-Seq for DE analysis
9.6 years ago by GouthamAtla 12k
2
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0
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3.1k
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Comment: Comment: DESeq2 inconsistent results
updated 19 months ago by 45k • written 9.6 years ago by 12k
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0
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4.1k
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Answer: A: Remove Reads from fastq file based on read IDs
9.6 years ago by GouthamAtla 12k
1
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3
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3.6k
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Answer: Answer: How to use fastools digest function to cut the positive strand of DNA exclusivel
updated 2.6 years ago by 45k • written 9.7 years ago by 12k
0
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0
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1.9k
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Comment: C: How to create functional categories of genes after obtaining annotation
9.6 years ago by GouthamAtla 12k
1,492 results • Page 15 of 30
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