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Comment: C: Convert alignment in Fasta/Clustal format to SAM/BAM file
10.6 years ago by GouthamAtla 12k
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0
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8.4k
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Comment: C: Convert alignment in Fasta/Clustal format to SAM/BAM file
10.6 years ago by GouthamAtla 12k
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1
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5.7k
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Comment: C: perl script for multifasta sequence analysis
10.6 years ago by GouthamAtla 12k
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1
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9.9k
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Answer: A: Downloading fasta sequences for PDB IDs in bulk
10.6 years ago by GouthamAtla 12k
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1
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4.2k
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Comment: C: Starting up with PLINK
10.6 years ago by GouthamAtla 12k
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1
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4.5k
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Comment: Comment: How to handle technical and biological replicates using cufflinks
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
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5.2k
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Answer: Answer: Struggle to loop over multiple files with BioPython
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
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5.2k
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Comment: Comment: Struggle to loop over multiple files with BioPython
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
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1
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2.9k
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Comment: C: insert word in each row
10.6 years ago by GouthamAtla 12k
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0
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4.5k
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Comment: C: Suggestions for RNA seq pipeline
10.6 years ago by GouthamAtla 12k
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1
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4.5k
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Comment: C: Suggestions for RNA seq pipeline
10.6 years ago by GouthamAtla 12k
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2
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5.2k
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Answer: Answer: Struggle to loop over multiple files with BioPython
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
1
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1
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8.0k
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Multiple sequence alignment between multi fasta files ?
msa alignments
updated 4.6 years ago by 45k • written 10.8 years ago by 12k
2
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0
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13k
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Answer: Answer: Finding bases at specific sites using pysam pileup
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
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1
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13k
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Comment: Comment: Finding bases at specific sites using pysam pileup
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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13k
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Comment: Comment: Finding bases at specific sites using pysam pileup
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
1
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0
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3.4k
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Answer: Answer: differentially expressed genes
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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6.5k
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Comment: C: What is the best way to handle unmapped reads from RNA-Seq data
10.6 years ago by GouthamAtla 12k
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0
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2.8k
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Comment: C: Identify common genes and their respective DNA sequences
10.6 years ago by GouthamAtla 12k
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0
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2.8k
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Comment: Comment: Very different result from chip-sea data between mm9 and mm10 using galaxy. Is t
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
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0
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6.5k
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Comment: C: What is the best way to handle unmapped reads from RNA-Seq data
10.6 years ago by GouthamAtla 12k
1
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0
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3.8k
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Answer: Answer: Maker Annotation Error: Unsupported characters
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
2
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3
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3.9k
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Forum: Need suggestions for rna-seq pipeline.
annocript cuffmerge RNA-seq cufflinks tophat2
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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7.7k
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Comment: C: Bowtie 2 error
10.6 years ago by GouthamAtla 12k
0
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0
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3.9k
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Comment: C: Need suggestions for rna-seq pipeline.
10.6 years ago by GouthamAtla 12k
1
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1
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9.7k
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Comment: C: Optimal design for bioinformatics "lab" space?
10.6 years ago by GouthamAtla 12k
0
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0
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2.1k
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Comment: C: Help with getting data about the gene size distribution
10.6 years ago by GouthamAtla 12k
0
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1
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3.6k
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Answer: A: Processng cuffnorm output
10.6 years ago by GouthamAtla 12k
0
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1
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3.6k
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Comment: C: Processng cuffnorm output
10.6 years ago by GouthamAtla 12k
0
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1
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6.3k
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Comment: C: Best Possible set of Python interview questions for Bioinformatics, that a recru
10.6 years ago by GouthamAtla 12k
0
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1
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6.3k
views
Comment: Comment: Best Possible set of Python interview questions for Bioinformatics, that a recru
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
2
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1
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2.8k
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Comment: C: error after running tophat
10.6 years ago by GouthamAtla 12k
0
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1
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2.8k
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Comment: Comment: error after running tophat
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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0
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3.9k
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Comment: Comment: Read alignment for ChIPseq
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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3.5k
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Answer: Answer: Can I align paired end reads and orphan reads to reference sequences at the same
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
2
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0
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19k
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Comment: C: How do I run Tophat?
10.6 years ago by GouthamAtla 12k
11
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0
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24k
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Answer: Answer: Can someone please explain in simple terms how DESeq2 works?
updated 3.6 years ago by 45k • written 10.8 years ago by 12k
0
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0
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15k
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Comment: C: How to remove reads with hard/soft clipping along with its mate?
10.6 years ago by GouthamAtla 12k
0
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1
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7.5k
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Comment: C: Making FASTA files
10.6 years ago by GouthamAtla 12k
0
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1
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7.5k
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Comment: C: Making FASTA files
10.6 years ago by GouthamAtla 12k
0
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0
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4.5k
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Answer: Answer: Filtering counts from BEDTOOLS depending on the overlapped size
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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4.5k
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Comment: C: Filtering counts from BEDTOOLS depending on the overlapped size
10.6 years ago by GouthamAtla 12k
0
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1
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16k
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Answer: Answer: Peak Calling with MACS (treat and control samples)
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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0
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1.6k
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Comment: C: Tool to check Number of cells covered in the RNA sample after RNA-Seq analysis?
10.6 years ago by GouthamAtla 12k
0
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1
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1.6k
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Comment: C: Tool to check Number of cells covered in the RNA sample after RNA-Seq analysis?
10.6 years ago by GouthamAtla 12k
0
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0
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2.9k
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Comment: Comment: Zero expression Cuffdiff - conversative cut-off
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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3.2k
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Comment: Comment: Differential Expression based on Sequences from lncRNA
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
0
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1
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2.3k
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Answer: Answer: My RNA-seq data is non-stranded. How can I use Cufflinks?
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
1
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1
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3.2k
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Answer: Answer: Differential Expression based on Sequences from lncRNA
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
1
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1
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3.2k
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Comment: Comment: Differential Expression based on Sequences from lncRNA
updated 3.4 years ago by 45k • written 10.6 years ago by 12k
1,492 results • Page 23 of 30
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