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comments
0
votes
0
replies
7.8k
views
Comment:
C: need to separate read1 and read2 to run tophat2
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
3.2k
views
Comment:
C: Cutoff of reads in htseq
10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
19k
views
Comment:
Comment: BioConductor packages not available for R 3.0.2
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
2
replies
19k
views
Comment:
C: BioConductor packages not available for R 3.0.2
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.7k
views
Comment:
Comment: Tophat input ambiguity
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.8k
views
Comment:
Comment: Is it typical to find a ~30 bp motif enriched in promoters of ~20 related genes?
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
2.7k
views
Answer:
Answer: Tophat input ambiguity
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.2k
views
Answer:
A: Transcriptome data handeling
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.5k
views
Answer:
Answer: snp calling using reference with no raw data
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
2.5k
views
Comment:
C: snp calling using reference with no raw data
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.2k
views
Comment:
Comment: How to filter highly transcribed genes?
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
2
replies
2.2k
views
Answer:
Answer: How to filter highly transcribed genes?
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
5.3k
views
Comment:
Comment: No hits found
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
5.5k
views
Answer:
Answer: Help in NGS QC Toolkit
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
1
reply
3.9k
views
Answer:
Answer: Yeast genome SK1 strain
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
4.2k
views
Comment:
Comment: Paired end data loaded into geo as single end runs ... How to extraxct the data
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
2.1k
views
Comment:
Comment: Paired end reads DNA strains relationship.
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
34k
views
Comment:
Comment: Phylogenetic Analysis Of Whole Genomes
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
4.2k
views
Comment:
C: Paired end data loaded into geo as single end runs ... How to extraxct the data
10.9 years ago by
GouthamAtla
12k
2
votes
1
reply
4.0k
views
Answer:
Answer: Error while converting FastqToSam
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
0
replies
4.0k
views
Comment:
Comment: Error while converting FastqToSam
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
3.0k
views
Comment:
Comment: Calling consesus from BAM file into a fasta
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
5.2k
views
Answer:
A: featureCount not processing reads
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
5.2k
views
Answer:
Answer: Assign Pwm In Variable In Biopython
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
4.2k
views
Answer:
Answer: How to find Gene synteny among multiple sequences
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
3.4k
views
Comment:
Comment: CAP3 result interpretation
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
0
replies
6.7k
views
Comment:
Comment: R package used for PCA plotting in a paper (rice RNA-Seq)
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
2.1k
views
Answer:
Answer: Why alignment of sequence reads to a reference can be inaccurate towards the end
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
7
votes
0
replies
11k
views
Answer:
A: htseq-count for RNA Seq
10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
1.9k
views
Comment:
C: What tool should I use to compare biological reps
10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
2.1k
views
Answer:
A: Failed when reading bam file
10.9 years ago by
GouthamAtla
12k
2
votes
1
reply
12k
views
Comment:
Comment: How to keep the header when I'm extracting a specific region from a bam file
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
1
reply
12k
views
Comment:
Comment: How to keep the header when I'm extracting a specific region from a bam file
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
1
vote
1
reply
3.5k
views
Comment:
Comment: reads mapped in proper pair (99/147) but mapq=0 ?
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
24k
views
Comment:
Comment: Error in creating BAM index
updated 3.0 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
4.3k
views
Answer:
Answer: RNA-Seq: does stranded and directional mean the same thing?
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
0
replies
3.0k
views
Comment:
C: How to find list of genes nearest to list of intronic sequences
10.9 years ago by
GouthamAtla
12k
2
votes
0
replies
5.0k
views
Answer:
A: Clustering of genes using FPKM
10.9 years ago by
GouthamAtla
12k
1
vote
1
reply
5.3k
views
Answer:
A: I tried to visualize the bam file in IGV or genome viewer
10.9 years ago by
GouthamAtla
12k
1
vote
0
replies
4.1k
views
Answer:
Answer: Database of common contaminants in human genome assemblies
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
GouthamAtla
12k
0
votes
1
reply
3.9k
views
Answer:
Answer: How to mach gene names and source (lincRNA, antisense, protein_coding,....) with
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
0
votes
0
replies
3.7k
views
Comment:
C: How and Where can I get the reference genome to run bowtie ?
11.0 years ago by
GouthamAtla
12k
0
votes
0
replies
7.5k
views
Comment:
Comment: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
1
vote
0
replies
7.5k
views
Comment:
C: How to remove Mitochondrial genes from Human annotation file (.GTF)?
11.0 years ago by
GouthamAtla
12k
0
votes
1
reply
7.5k
views
Comment:
Comment: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
0
votes
2
replies
7.5k
views
Answer:
Answer: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
0
votes
1
reply
3.4k
views
Comment:
Comment: FPKM for Normal vs Tumor
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
1
vote
0
replies
4.5k
views
Answer:
Answer: Annotating RNA-seq gene ids (differentially expressed)
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
0
votes
1
reply
3.4k
views
Answer:
Answer: FPKM for Normal vs Tumor
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
1
vote
0
replies
2.1k
views
Comment:
Comment: Bright spot on affymetrix chips
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
GouthamAtla
12k
1,492 results • Page
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