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Comment: C: need to separate read1 and read2 to run tophat2
10.9 years ago by GouthamAtla 12k
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0
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3.2k
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Comment: C: Cutoff of reads in htseq
10.9 years ago by GouthamAtla 12k
0
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1
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19k
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Comment: Comment: BioConductor packages not available for R 3.0.2
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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2
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19k
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Comment: C: BioConductor packages not available for R 3.0.2
10.9 years ago by GouthamAtla 12k
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0
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2.7k
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Comment: Comment: Tophat input ambiguity
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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2.8k
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Comment: Comment: Is it typical to find a ~30 bp motif enriched in promoters of ~20 related genes?
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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1
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2.7k
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Answer: Answer: Tophat input ambiguity
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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2.2k
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Answer: A: Transcriptome data handeling
10.9 years ago by GouthamAtla 12k
0
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0
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2.5k
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Answer: Answer: snp calling using reference with no raw data
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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1
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2.5k
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Comment: C: snp calling using reference with no raw data
10.9 years ago by GouthamAtla 12k
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2.2k
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Comment: Comment: How to filter highly transcribed genes?
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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2
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2.2k
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Answer: Answer: How to filter highly transcribed genes?
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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1
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5.3k
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Comment: Comment: No hits found
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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1
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5.5k
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Answer: Answer: Help in NGS QC Toolkit
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
1
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1
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3.9k
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Answer: Answer: Yeast genome SK1 strain
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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4.2k
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Comment: Comment: Paired end data loaded into geo as single end runs ... How to extraxct the data
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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2.1k
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Comment: Comment: Paired end reads DNA strains relationship.
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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34k
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Comment: Comment: Phylogenetic Analysis Of Whole Genomes
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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1
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4.2k
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Comment: C: Paired end data loaded into geo as single end runs ... How to extraxct the data
10.9 years ago by GouthamAtla 12k
2
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1
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4.0k
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Answer: Answer: Error while converting FastqToSam
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
1
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0
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4.0k
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Comment: Comment: Error while converting FastqToSam
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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0
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3.0k
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Comment: Comment: Calling consesus from BAM file into a fasta
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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1
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5.2k
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Answer: A: featureCount not processing reads
10.9 years ago by GouthamAtla 12k
0
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0
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5.2k
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Answer: Answer: Assign Pwm In Variable In Biopython
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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0
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4.2k
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Answer: Answer: How to find Gene synteny among multiple sequences
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
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1
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3.4k
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Comment: Comment: CAP3 result interpretation
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
1
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0
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6.7k
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Comment: Comment: R package used for PCA plotting in a paper (rice RNA-Seq)
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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1
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2.1k
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Answer: Answer: Why alignment of sequence reads to a reference can be inaccurate towards the end
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
7
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0
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11k
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Answer: A: htseq-count for RNA Seq
10.9 years ago by GouthamAtla 12k
0
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0
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1.9k
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Comment: C: What tool should I use to compare biological reps
10.9 years ago by GouthamAtla 12k
0
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1
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2.1k
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Answer: A: Failed when reading bam file
10.9 years ago by GouthamAtla 12k
2
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1
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12k
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Comment: Comment: How to keep the header when I'm extracting a specific region from a bam file
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
1
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1
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12k
views
Comment: Comment: How to keep the header when I'm extracting a specific region from a bam file
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
1
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1
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3.5k
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Comment: Comment: reads mapped in proper pair (99/147) but mapq=0 ?
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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1
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24k
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Comment: Comment: Error in creating BAM index
updated 3.0 years ago by 45k • written 10.9 years ago by 12k
0
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1
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4.3k
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Answer: Answer: RNA-Seq: does stranded and directional mean the same thing?
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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0
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3.0k
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Comment: C: How to find list of genes nearest to list of intronic sequences
10.9 years ago by GouthamAtla 12k
2
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0
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5.0k
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Answer: A: Clustering of genes using FPKM
10.9 years ago by GouthamAtla 12k
1
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1
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5.3k
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Answer: A: I tried to visualize the bam file in IGV or genome viewer
10.9 years ago by GouthamAtla 12k
1
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0
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4.1k
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Answer: Answer: Database of common contaminants in human genome assemblies
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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1
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3.9k
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Answer: Answer: How to mach gene names and source (lincRNA, antisense, protein_coding,....) with
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
0
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0
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3.7k
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Comment: C: How and Where can I get the reference genome to run bowtie ?
11.0 years ago by GouthamAtla 12k
0
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0
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7.5k
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Comment: Comment: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
1
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0
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7.5k
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Comment: C: How to remove Mitochondrial genes from Human annotation file (.GTF)?
11.0 years ago by GouthamAtla 12k
0
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1
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7.5k
views
Comment: Comment: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
0
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2
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7.5k
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Answer: Answer: How to remove Mitochondrial genes from Human annotation file (.GTF)?
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
0
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1
reply
3.4k
views
Comment: Comment: FPKM for Normal vs Tumor
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
1
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0
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4.5k
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Answer: Answer: Annotating RNA-seq gene ids (differentially expressed)
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
0
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1
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3.4k
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Answer: Answer: FPKM for Normal vs Tumor
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
1
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0
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2.1k
views
Comment: Comment: Bright spot on affymetrix chips
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
1,492 results • Page 27 of 30
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