Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
0
replies
7.6k
views
Answer: A: Where can i find some bacterial RNA-Seq data?
updated 4.4 years ago by 43k • written 10.1 years ago by 12k
3
votes
1
reply
2.8k
views
Answer: A: Pipeline for RNA-seq analysis
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
2
votes
1
reply
3.7k
views
Answer: Answer: How to get individual chromosome sequence in fasta format from vcf.gz and its vc
updated 21 months ago by 43k • written 8.3 years ago by 12k
3
votes
1
reply
5.2k
views
Answer: A: How to extract coordinates of first exons from .gtf file.
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
3
votes
0
replies
7.3k
views
Answer: A: how to retrieve the nucleotide/base in a certain position using any programming
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
0
votes
1
reply
10k
views
Answer: A: Paired End Trimmomatic producing asymmetric paired read files.
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
1
vote
1
reply
12k
views
Answer: A: understanding pysam pileup()
updated 4.4 years ago by 43k • written 8.3 years ago by 12k
1
vote
1
reply
3.2k
views
Answer: A: extract sequences from a fasta file and save into different files
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
0
votes
1
reply
2.6k
views
Answer: A: Cuffdiff merged.gtf to UCSC bed format with gene_id
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
2
votes
0
replies
2.8k
views
Answer: A: bash loop to count variants using vcftools
updated 4.4 years ago by 43k • written 8.4 years ago by 12k
3
votes
1
reply
3.1k
views
Answer: A: Getting read counts per loci
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
3
votes
0
replies
6.3k
views
Answer: A: How to find overlapping regions among three bed files [Solved]
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
2
votes
1
reply
2.1k
views
Answer: A: All the CIGAR strings of reads mapped by Bowtie are "I"
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
1
vote
0
replies
4.2k
views
Answer: A: Get multiple snps coverage (allelic depth) from bam files
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
1
vote
2
replies
21k
views
Answer: A: how to rearrange fasta file according to its length
updated 4.4 years ago by 43k • written 8.7 years ago by 12k
1
vote
1
reply
4.3k
views
Answer: A: RNA-seq normalization and differential expression
updated 4.5 years ago by 43k • written 8.6 years ago by 12k
1
vote
1
reply
2.4k
views
Answer: Answer: Generate heatmap or table showing genes found in multiple tests
updated 19 months ago by 43k • written 8.7 years ago by 12k
2
votes
1
reply
12k
views
Answer: A: Problem with MACS2 Install?
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
0
votes
1
reply
1.8k
views
Answer: A: Issues producing an output file when using fastx quality stats program
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
0
votes
1
reply
2.8k
views
Answer: A: HTseq problem....... with code for qa module published in the HTseq web tutoria
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
1
vote
0
replies
1.6k
views
Answer: A: small sequence ectraction
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
2
votes
1
reply
3.5k
views
Answer: A: cutadapt cannot work on my fastq files
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
votes
2
replies
7.8k
views
Answer: A: Why is an Input file used as a control during MACS peak calling?
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
votes
2
replies
2.6k
views
Answer: A: trying to select some files from a multifasta depending on accession number usin
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
votes
1
reply
2.5k
views
Answer: Answer: juncBASE python script
updated 18 months ago by 43k • written 8.8 years ago by 12k
3
votes
1
reply
654
views
Answer: C: Correlation analysis for low expressed genes
4.5 years ago by GouthamAtla 12k
0
votes
0
replies
860
views
Answer: A: Most recent tools for circadian gene expression analysis (in plants)
4.5 years ago by GouthamAtla 12k
3
votes
1
reply
3.2k
views
Answer: A: DiffBind to call differential binding of Super-enhancers from ROSE
4.5 years ago by GouthamAtla 12k
0
votes
0
replies
937
views
Answer: A: exon-intron reads in neuron samples
4.5 years ago by GouthamAtla 12k
2
votes
0
replies
1.4k
views
Answer: A: Current standards for batch correction and gene expression correction?
4.5 years ago by GouthamAtla 12k
2
votes
1
reply
6.4k
views
Answer: A: need to separate read1 and read2 to run tophat2
updated 4.6 years ago by 43k • written 9.4 years ago by 12k
0
votes
1
reply
3.1k
views
Answer: A: How and Where can I get the reference genome to run bowtie ?
updated 4.6 years ago by 43k • written 9.4 years ago by 12k
1
vote
2
replies
5.0k
views
Answer: Answer: PacBio Long Read error correction through PBcR --> pacbio.spec field
updated 18 months ago by 43k • written 9.4 years ago by 12k
9
votes
3
replies
5.6k
views
Answer: A: the analysis of multiple samples of 10X scRNA-seq
4.6 years ago by GouthamAtla 12k
7
votes
4
replies
6.8k
views
Answer: A: Optimal design for bioinformatics "lab" space?
4.6 years ago by GouthamAtla 12k
1
vote
0
replies
27k
views
Answer: A: Pull number of cells in cluster from seurat object
4.6 years ago by GouthamAtla 12k
0
votes
1
reply
2.2k
views
Answer: A: Error extracting faa sequences from multifasta using faidx
updated 4.7 years ago by 43k • written 8.4 years ago by 12k
2
votes
0
replies
1.9k
views
Answer: A: Calculating each gene's mean of intron length
4.7 years ago by GouthamAtla 12k
0
votes
1
reply
2.1k
views
Answer: A: Allele count from BAM file
4.7 years ago by GouthamAtla 12k
1
vote
1
reply
1.2k
views
Answer: A: Assignment of distal regions to genes
4.8 years ago by GouthamAtla 12k
0
votes
0
replies
2.2k
views
Answer: A: Interpreting splice junctions on IGV
4.8 years ago by GouthamAtla 12k
2
votes
0
replies
952
views
Answer: A: Allele specific expression
4.9 years ago by GouthamAtla 12k
2
votes
1
reply
1.1k
views
Answer: A: Averaging multiple columns
4.9 years ago by GouthamAtla 12k
1
vote
1
reply
2.1k
views
Answer: A: Single cell-seq data preprocessing-How to detect the gene/transcript distributio
5.0 years ago by GouthamAtla 12k
0
votes
1
reply
1.1k
views
Answer: A: The distance in nucleotide between two genes on different strands
5.0 years ago by GouthamAtla 12k
0
votes
1
reply
1.0k
views
Answer: A: find transcription factor binding site with small sequence from UCSC
5.0 years ago by GouthamAtla 12k
2
votes
1
reply
1.6k
views
Answer: A: macs14 replicates treatment and final wiggle peak files
5.0 years ago by GouthamAtla 12k
0
votes
1
reply
5.7k
views
Answer: A: How to calculate average expression of each gene from single cell RNA-Seq data
5.0 years ago by GouthamAtla 12k
0
votes
0
replies
1.1k
views
Answer: A: How can I filter my RNA-seq transcript data to display ONLY novel isoforms and v
5.0 years ago by GouthamAtla 12k
4
votes
1
reply
2.2k
views
Answer: C: featureCounts - annotation file issue
5.0 years ago by GouthamAtla 12k
466 results • Page 2 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6