User: williamsbrian5064

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Posts by williamsbrian5064

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Comment: C: Software to predict impact of SNPs or Indels
... That hurt my feelings a little bit ...
written 4 weeks ago by williamsbrian5064130
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Comment: C: Software to predict impact of SNPs or Indels
... Yeah! I am on the prowl for some right now. Do you have any preferred software? ...
written 4 weeks ago by williamsbrian5064130
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Comment: C: Software to predict impact of SNPs or Indels
... I was really just listing sift and polyphen. I like sift because you can download the software and it will run an entire VCF file with no other input. Polyphen2, you have to do a lot of manual labor. I would like to find 2 or 3 different software that I can just upload my VCF and go. Maybe that is A ...
written 4 weeks ago by williamsbrian5064130
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Comment: C: Software to predict impact of SNPs or Indels
... Very cool! Any favorites that you prefer? I am running into some that are available for humans :/ ...
written 4 weeks ago by williamsbrian5064130
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Comment: C: Software to predict impact of SNPs or Indels
... Can you mass submit for any of those? ...
written 4 weeks ago by williamsbrian5064130
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Comment: C: Software to predict impact of SNPs or Indels
... Hahaha no. Just a frustrated grad student. Kevin, you the bomb. You never disappoint. ...
written 4 weeks ago by williamsbrian5064130
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Software to predict impact of SNPs or Indels
... Hi, I work with nonhuman data. I have a bunch of SNPs that I want to predict how deleterious the SNP is. I know there is software out there like sift, polyphen, and provean. The issue I have is that you have to manually input them. I was wondering if anyone has developed a pipeline to mass submit S ...
genome next-gen snp written 4 weeks ago by williamsbrian5064130
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Comment: C: How would you trim this RNA-seq data
... When you say adapters, are you referring to the "Overrepresented sequences"? or the actual "Adapter content"? Also, why do you think there are single end adaptors? This was a paired end? ...
written 10 weeks ago by williamsbrian5064130
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How would you trim this RNA-seq data
... Hi, I am working on an RNA-Seq project. We just got back some sequencing and I had a couple questions about it. I figure someone here might be able to help me out a bit. So I think the sequencing doesn't look too bad. I don't really like trimming RNA-seq data if I don't have to, but I attached i ...
next-gen rna-seq written 10 weeks ago by williamsbrian5064130
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How to edit ped and map files
... Hi, I just had a quick question. I was wondering if there was an easy way to manipulate ped and map files? Maybe in R? I specifically need to edit my map file. I am having an issue with the marker ID (rs# or snp identifier). I need to add them into the files and I'm not sure how to do this. Is the ...
R chip-seq plink snp assembly written 10 weeks ago by williamsbrian5064130

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Popular Question 17 days ago, created a question with more than 1,000 views. For Best way to merge multiple VCF files
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