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5
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Error: htsjdk.tribble.TribbleExpection: The provided VCF file is malformed at approximately line number 5880: Duplicate allele added to VariantContex…
SNP genome next-gen Assembly
updated 2.2 years ago by ▴ 70 • written 4.8 years ago by ▴ 540
0
votes
2
replies
4.1k
views
Sleuth_fit error "`Error in if (sum(valid) == 0) { : missing value where TRUE/FALSE needed"
R rna-seq software error Assembly
updated 3.8 years ago by ▴ 370 • written 8.0 years ago by ▴ 540
3
votes
1
reply
1.3k
views
Liftover using gVCF
genome assembly GATK liftover
updated 3.9 years ago by ★ 4.8k • written 3.9 years ago by ▴ 540
0
votes
1
reply
1.3k
views
Running SnpSift in parallel
VCF WGS Annotation
updated 4.1 years ago by 166k • written 4.1 years ago by ▴ 540
0
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0
replies
1.8k
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Comment: Comment: Case Control count per variant
4.2 years ago by williamsbrian5064 ▴ 540
0
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1
reply
1.8k
views
Comment: Comment: Case Control count per variant
4.2 years ago by williamsbrian5064 ▴ 540
1
vote
4
replies
1.8k
views
Case Control count per variant
WGS VCF Annotation NGS
4.2 years ago by williamsbrian5064 ▴ 540
0
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1
reply
3.7k
views
Comment: Comment: Get REVEL plugin started with VEP
4.3 years ago by williamsbrian5064 ▴ 540
0
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3
replies
1.8k
views
Comment: Comment: How to calculate combined expression of two genes
4.5 years ago by williamsbrian5064 ▴ 540
4
votes
5
replies
1.8k
views
How to calculate combined expression of two genes
R rna-seq
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 540
4
votes
4
replies
3.5k
views
GATK markduplicates out of memory
Assembly WGS MarkDuplicates GATK
updated 4.5 years ago by 166k • written 4.5 years ago by ▴ 540
0
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1
reply
3.5k
views
Comment: Comment: GATK markduplicates out of memory
4.5 years ago by williamsbrian5064 ▴ 540
6
votes
2
replies
2.7k
views
bcftools vcf2sex
genomics genome alignment genotyping
updated 4.6 years ago by ★ 1.5k • written 4.6 years ago by ▴ 540
0
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1
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4.5k
views
Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
4.6 years ago by williamsbrian5064 ▴ 540
0
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0
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4.5k
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Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
4.6 years ago by williamsbrian5064 ▴ 540
3
votes
5
replies
4.5k
views
PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failures
SNP Assembly genome next-gen
4.6 years ago by williamsbrian5064 ▴ 540
0
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1
reply
5.1k
views
Comment: C: bcftools +fill-tag does not work in loop
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
replies
3.5k
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Comment: C: Minor allele count report with --freq count in PLINK2
4.7 years ago by williamsbrian5064 ▴ 540
0
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1
reply
5.1k
views
Comment: C: bcftools +fill-tag does not work in loop
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
replies
3.3k
views
Comment: C: Remove Chr:position format to just Chr
4.7 years ago by williamsbrian5064 ▴ 540
1
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1
reply
3.3k
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Comment: C: Remove Chr:position format to just Chr
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
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3.3k
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Comment: C: Remove Chr:position format to just Chr
4.7 years ago by williamsbrian5064 ▴ 540
0
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1
reply
3.5k
views
Comment: C: Minor allele count report with --freq count in PLINK2
4.7 years ago by williamsbrian5064 ▴ 540
1
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2
replies
3.3k
views
Answer: A: Remove Chr:position format to just Chr
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
replies
3.3k
views
Comment: C: Remove Chr:position format to just Chr
4.7 years ago by williamsbrian5064 ▴ 540
0
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1
reply
1.8k
views
Answer: A: Get TSS information from GFF3 file depending on strand
4.7 years ago by williamsbrian5064 ▴ 540
2
votes
0
replies
922
views
Comment: C: Different symbols in genotype field in VCF files
4.7 years ago by williamsbrian5064 ▴ 540
0
votes
0
replies
6.6k
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Comment: C: Remove uncharacterized chromosomes from reference fasta file
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
replies
6.6k
views
Comment: C: Remove uncharacterized chromosomes from reference fasta file
4.7 years ago by williamsbrian5064 ▴ 540
3
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1
reply
6.6k
views
Comment: C: Remove uncharacterized chromosomes from reference fasta file
4.7 years ago by williamsbrian5064 ▴ 540
17
votes
7
replies
6.6k
views
Remove uncharacterized chromosomes from reference fasta file
Assembly genome sequence next-gen
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 540
0
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0
replies
5.0k
views
Comment: C: How to sort fasta file numerically
4.7 years ago by williamsbrian5064 ▴ 540
0
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0
replies
5.0k
views
Comment: C: How to sort fasta file numerically
4.7 years ago by williamsbrian5064 ▴ 540
0
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1
reply
5.0k
views
Comment: C: How to sort fasta file numerically
4.7 years ago by williamsbrian5064 ▴ 540
0
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1
reply
5.0k
views
Comment: C: How to sort fasta file numerically
4.7 years ago by williamsbrian5064 ▴ 540
11
votes
8
replies
5.0k
views
How to sort fasta file numerically
Assembly genome sequence
updated 4.7 years ago by 90k • written 4.7 years ago by ▴ 540
4
votes
3
replies
9.1k
views
Samtools bam2fq converting bam file to fastq. What happens to unmapped reads?
Assembly alignment sequencing next-gen
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 540
0
votes
0
replies
1.6k
views
Comment: C: Error occur during tophat2 downloading
4.8 years ago by williamsbrian5064 ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Error: htsjdk.tribble.TribbleExpection: The provided VCF file is malformed at ap
4.8 years ago by williamsbrian5064 ▴ 540
0
votes
1
reply
1.5k
views
Computing all possible single amino acid substitutions for a protein
genome gene
updated 4.9 years ago by • 0 • written 6.4 years ago by ▴ 540
0
votes
1
reply
3.1k
views
Comment: C: How to remove contamination from WGS fastq files
5.1 years ago by williamsbrian5064 ▴ 540
0
votes
1
reply
3.1k
views
Comment: C: How to remove contamination from WGS fastq files
5.1 years ago by williamsbrian5064 ▴ 540
0
votes
1
reply
3.1k
views
Comment: C: How to remove contamination from WGS fastq files
5.1 years ago by williamsbrian5064 ▴ 540
8
votes
10
replies
3.1k
views
How to remove contamination from WGS fastq files
next-gen sequence
updated 5.1 years ago by 154k • written 5.1 years ago by ▴ 540
0
votes
1
reply
3.1k
views
Comment: C: How to remove contamination from WGS fastq files
5.1 years ago by williamsbrian5064 ▴ 540
1
vote
0
replies
7.2k
views
Comment: C: No alias or index file found for protein database
6.1 years ago by williamsbrian5064 ▴ 540
0
votes
0
replies
7.2k
views
Comment: C: No alias or index file found for protein database
6.1 years ago by williamsbrian5064 ▴ 540
0
votes
1
reply
24k
views
Comment: C: Best tool for variant calling
6.1 years ago by williamsbrian5064 ▴ 540
0
votes
2
replies
1.1k
views
samtools having to use -A input option
assembly next-gen genome alignment
6.3 years ago by williamsbrian5064 ▴ 540
17
votes
37
replies
7.2k
views
No alias or index file found for protein database
next-gen software error sequence
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 540
195 results • Page 1 of 4
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