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Showing :
questions
2
votes
7
replies
2.5k
views
Normalize FPKM values for cross-sample comparisons?
FPKM
RNA-Seq
Normalization
3.5 years ago by
cindy.perscheid
▴ 100
0
votes
1
reply
1.1k
views
TCGA MAF (mutation annotation format) to EIGENSOFT's smartpca via PLINK (or: how to get SNP centiMorgan from TCGA MAFs)?
SNP
centiMorgan
covariate
mutation annotation
3.7 years ago by
cindy.perscheid
▴ 100
0
votes
0
replies
1.2k
views
Data set with both genetic variants and gene expressions
gene expression
variants
causal relationship
GTEx
updated 6.3 years ago by
Biostar
20 • written 6.4 years ago by
cindy.perscheid
▴ 100
0
votes
9
replies
3.0k
views
GDC TCGA Metadata no project ID available?
gene expression
GDC
TCGA
metadata
6.4 years ago by
cindy.perscheid
▴ 100
6
votes
6
replies
2.8k
views
Experience with dbGaP controlled access from outside the US?
dbGaP
controlled access
updated 6.5 years ago by
i.sudbery
19k • written 6.5 years ago by
cindy.perscheid
▴ 100
0
votes
2
replies
3.1k
views
What preprocessing steps are required for the different TCGA/GDC Gene Expression Data (Counts, FPKM-UQ)?
RNA-Seq
TCGA
FPKM-UQ
Normalization
Gene Expression
6.7 years ago by
cindy.perscheid
▴ 100
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