Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
1
reply
1.2k
views
Answer: Answer: How to sort multi columns on long dataframe in R
3.1 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
802
views
Answer: A: Over-Expressed Gene Sample
3.6 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
2.2k
views
Answer: A: Does PCA results impact on DESeq2 design choices?
3.6 years ago by caggtaagtat ★ 1.9k
1
vote
2
replies
1.9k
views
Answer: A: Mann-Whitney Test/Wilcoxon but for individual genes between case and control
3.6 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
4.0k
views
Answer: A: Help needed for Ensembl Gene ID conversion for RNA-seq data - biomart / EnsDb.Hs
3.6 years ago by caggtaagtat ★ 1.9k
3
votes
1
reply
1.3k
views
Answer: A: ggplot stacked barchart help
3.7 years ago by caggtaagtat ★ 1.9k
2
votes
1
reply
868
views
Answer: A: How to choose the right model?
3.7 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
1.3k
views
Answer: A: Detection T cell receptor transcripts
3.7 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
2.5k
views
Answer: A: plotting top 10 Differentially expressed genes
3.7 years ago by caggtaagtat ★ 1.9k
2
votes
2
replies
1.5k
views
Answer: A: Accesing intron sequences using the GenomicFeatures package (R)?
3.7 years ago by caggtaagtat ★ 1.9k
4
votes
1
reply
8.4k
views
Answer: A: Is it correct to use DESeq2's baseMean for interpretation of transcript expressi
3.7 years ago by caggtaagtat ★ 1.9k
3
votes
0
replies
1.0k
views
Answer: A: SNPs on a single transcript of a gene with multiple transcripts
3.7 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
747
views
Answer: A: How to find out the domains encoded by each exon and predict gene isoform role/f
3.7 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
2.2k
views
Answer: A: RStudio Pheatmap: sort DEG by logFC
3.8 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
4.4k
views
Answer: A: Why Salmon produces very different quantification results compared with featureC
3.8 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
1.1k
views
Answer: A: Adapter removing with Trimmomatic
3.8 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
2.3k
views
Answer: A: STAR index/alignment error : no exons found
3.8 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
771
views
Answer: A: Validation of protein-coding gene and lncRNA correlation
3.9 years ago by caggtaagtat ★ 1.9k
0
votes
2
replies
2.1k
views
Answer: A: How to remove non protein coding genes from single cell pre-mRNA seq?
3.9 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
639
views
Answer: A: How to colour all points that agree with multiple conditions
3.9 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
1.6k
views
Answer: A: Genes vs transcripts in RNA-seq analysis
3.9 years ago by caggtaagtat ★ 1.9k
2
votes
0
replies
2.1k
views
Answer: A: What sequence do I get when using paired-end stranded protocol
3.9 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
995
views
Answer: A: Get splice-read counts from STAR-output
4.2 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
2.0k
views
Answer: A: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
4.3 years ago by caggtaagtat ★ 1.9k
2
votes
1
reply
8.8k
views
Answer: A: STAR alignment EXITING because of FATAL ERROR: could not create output file
4.4 years ago by caggtaagtat ★ 1.9k
3
votes
0
replies
945
views
Answer: A: Identification of Human Genes ?
4.4 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
609
views
Answer: A: Cis-regulatory motif discovery from RNA-Seq
4.5 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
8.4k
views
Answer: A: snakemake: pipeline failed when submit to cluster
4.5 years ago by caggtaagtat ★ 1.9k
9
votes
2
replies
5.0k
views
Answer: A: Running STAR with --twopassMode Basic
4.5 years ago by caggtaagtat ★ 1.9k
2
votes
1
reply
631
views
Answer: A: Making genome-wide transcription level track from transcript level count
4.6 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
969
views
Answer: A: dUTP sequencing -- different strand-ratios for different samples
4.6 years ago by caggtaagtat ★ 1.9k
4
votes
1
reply
6.5k
views
Answer: A: deseq2 or edgeR
4.6 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
1.4k
views
Answer: A: gene prediction without GT-AG splice site bias
4.8 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
2.3k
views
Answer: A: Should I generate a new Index genome in STAR for 50 base reads instead of 100 ba
4.8 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
2.8k
views
Answer: A: Running SortMeRNA for bulk RNAseq data
4.8 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
3.9k
views
Answer: A: Using STAR mapping multiple files get loop issue
5.0 years ago by caggtaagtat ★ 1.9k
5
votes
1
reply
2.1k
views
Answer: A: Question about exon/intron counting in RNA-seq dataset analysis
5.0 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
1.7k
views
Answer: A: What human transcriptome annotation to use for RNA-seq analysis
5.1 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
3.2k
views
Answer: A: What to do after differential expression
5.1 years ago by caggtaagtat ★ 1.9k
2
votes
1
reply
11k
views
Answer: A: How should I handle the raw reads with failed per base sequence content in fastQ
5.1 years ago by caggtaagtat ★ 1.9k
2
votes
0
replies
2.7k
views
Answer: A: Only 1% of reads are used as "input reads" in STAR
5.2 years ago by caggtaagtat ★ 1.9k
9
votes
1
reply
15k
views
Answer: A: Suggestions for Trimmomatic and "illuminaclip" parameter
5.2 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
1.4k
views
Answer: A: Enrichment Analysis with only GeneSymbols
5.2 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
3.3k
views
Answer: A: Pathway enrichment and analysis of mice gene sets in R platform
5.2 years ago by caggtaagtat ★ 1.9k
0
votes
1
reply
1.5k
views
Answer: A: RNA seq stranded
5.3 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
3.3k
views
Answer: A: Genome index and Aligment with STAR- Rattus Norvegicus
5.4 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
1.7k
views
Answer: A: Strand specific in RNA-seq
5.4 years ago by caggtaagtat ★ 1.9k
1
vote
0
replies
2.1k
views
Answer: A: Detecting antisense RNA in unstranded RNA-Seq data
5.5 years ago by caggtaagtat ★ 1.9k
0
votes
0
replies
2.5k
views
Answer: A: Finding the start codon
5.5 years ago by caggtaagtat ★ 1.9k
1
vote
1
reply
13k
views
Answer: A: STAR problem: EXITING because of INPUT ERROR: could not open genomeFastaFile:
5.5 years ago by caggtaagtat ★ 1.9k
67 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6