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Showing :
questions
3
votes
3
replies
1.6k
views
CWL: Is there a way to only pass certain fields from a `record` type to a step?
cwl
updated 4.2 years ago by
Biostar
20 • written 7.1 years ago by
ionox0
▴ 390
5
votes
3
replies
1.3k
views
interesting behavior with grep
cwl
5.9 years ago by
ionox0
▴ 390
1
vote
0
replies
908
views
Difference between TMPDIR environment variable, --workdir in Toil / CWL
cwl
toil
6.1 years ago by
ionox0
▴ 390
4
votes
5
replies
2.0k
views
Why is ShellCommandRequirement necessary for Pipes
cwl
6.2 years ago by
ionox0
▴ 390
0
votes
3
replies
1.6k
views
Upgrade to Toil 3.18 no longer allows optional parameters to be omitted when passed through subworkflow
cwl
toil
6.3 years ago by
ionox0
▴ 390
2
votes
1
reply
903
views
Creating a temporary directory for tools to use
cwl
6.3 years ago by
ionox0
▴ 390
2
votes
1
reply
1.8k
views
CWL pipe doesn't seem to be working (Solved: user error)
cwl
6.4 years ago by
ionox0
▴ 390
3
votes
3
replies
1.6k
views
How to specify enum symbols in record type definition?
cwl
updated 6.4 years ago by
Michael R. Crusoe
★ 1.9k • written 6.4 years ago by
ionox0
▴ 390
7
votes
10
replies
4.1k
views
best practice for renaming file in CWL workflow
cwl
updated 6.5 years ago by
Michael R. Crusoe
★ 1.9k • written 6.5 years ago by
ionox0
▴ 390
2
votes
1
reply
1.2k
views
size considerations CWL Toil workflow step inputs
cwl
toil
6.5 years ago by
ionox0
▴ 390
7
votes
5
replies
1.6k
views
toil stats under-reporting memory usage?
cwl
toil
6.5 years ago by
ionox0
▴ 390
3
votes
2
replies
1.3k
views
possible to show job names in toil stats command using cwl workflow
toil
cwl
updated 6.5 years ago by
Michael R. Crusoe
★ 1.9k • written 6.6 years ago by
ionox0
▴ 390
4
votes
1
reply
1.4k
views
Bottleneck for scattered subworkflows
cwl
toil
updated 6.6 years ago by
Carlos Borroto
★ 2.1k • written 6.6 years ago by
ionox0
▴ 390
1
vote
1
reply
1.5k
views
Possible to combine inputs using valueFrom for scatter
cwl
updated 6.6 years ago by
Michael R. Crusoe
★ 1.9k • written 6.6 years ago by
ionox0
▴ 390
2
votes
1
reply
1.3k
views
Rules regarding secondaryFiles in subworkflows
cwl
updated 6.7 years ago by
bogdan.gavrilovic
▴ 250 • written 6.7 years ago by
ionox0
▴ 390
1
vote
9
replies
2.3k
views
scatter over optional argument
cwl
updated 6.7 years ago by
bogdan.gavrilovic
▴ 250 • written 6.8 years ago by
ionox0
▴ 390
1
vote
3
replies
1.3k
views
Is there a way to set a basename for an output Directory?
cwl
6.8 years ago by
ionox0
▴ 390
2
votes
2
replies
1.3k
views
InitialWorkDirRequirement copies or symlinks files?
cwl
6.8 years ago by
ionox0
▴ 390
3
votes
1
reply
1.6k
views
InitialWorkDirRequirement error with array of Directories
cwl
6.9 years ago by
ionox0
▴ 390
3
votes
1
reply
1.1k
views
CWL: Is there a way to have a list of imported Record types as an input?
cwl
updated 6.9 years ago by
Michael R. Crusoe
★ 1.9k • written 7.0 years ago by
ionox0
▴ 390
3
votes
1
reply
1.7k
views
CWL: Is there a way to output an output file with one of the inputs of the tool in a Record type?
cwl
updated 6.9 years ago by
bogdan.gavrilovic
▴ 250 • written 7.0 years ago by
ionox0
▴ 390
0
votes
2
replies
1.3k
views
Conflicting errors with "baseCommand" vs "arguments" usage
cwl
6.9 years ago by
ionox0
▴ 390
6
votes
3
replies
3.5k
views
What is the recommended way to debug JavaScript in CWL?
cwl
updated 3.2 years ago by
steve
★ 3.5k • written 7.1 years ago by
ionox0
▴ 390
4
votes
1
reply
1.4k
views
Is there a way to repeat a prefix for an input that is an array of strings?
cwl
updated 7.0 years ago by
bogdan.gavrilovic
▴ 250 • written 7.1 years ago by
ionox0
▴ 390
3
votes
2
replies
1.3k
views
More concise way to pass many parameters through to subworkflows
cwl
updated 7.0 years ago by
kaushik.ghose
▴ 80 • written 7.1 years ago by
ionox0
▴ 390
2
votes
1
reply
1.9k
views
Taking directory path for reading as well as writing files
cwl
toil
cwltoil
7.0 years ago by
ionox0
▴ 390
3
votes
3
replies
2.9k
views
Why does read with "read paired" flag not have mate in bam file?
bam
paired
mate
sequencing
updated 7.1 years ago by
d-cameron
★ 2.9k • written 7.3 years ago by
ionox0
▴ 390
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