User: bioinformatics_bel

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US, Alaska
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1 year, 7 months ago
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1 year, 9 months ago
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MD, software engineer, scientist

Posts by bioinformatics_bel

<prev • 14 results • page 1 of 2 • next >
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What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
... What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results? Need specific tools for pine and birch genomes or some universal software, if possible. ...
assembly postprocessing annotation denovo plant written 20 months ago by bioinformatics_bel20 • updated 20 months ago by colindaven1.6k
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Is there any plant-specific genome assembler?
... Is there any plant-specific genome assembler? Need it for forestry: birch and pine genome data processing. Thx. ...
birch plant assembly pine written 20 months ago by bioinformatics_bel20 • updated 20 months ago by Medhat8.4k
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Comment: C: Is there any way to retrieve a list of start and end positions of tuberculosis g
... what package to download and where to put these codes? I have tried lInux shell terminal and it does not work for a list of genes, thx. ...
written 20 months ago by bioinformatics_bel20
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Comment: C: Is there any way to retrieve a list of start and end positions of tuberculosis g
... what package to download and where to put these codes? I have tried lInux shell terminal and it does not work for list of genes, thx. ...
written 20 months ago by bioinformatics_bel20
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Comment: C: Is there any way to retrieve a list of start and end positions of tuberculosis g
... what package to download and where to put these codes? I have tried lInux shell terminal and it does not work for list of genes, thx. ...
written 20 months ago by bioinformatics_bel20
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(Closed) What human genome genes are responsible for ethnicity, ethnogeographical features applied to forensic sciences?
... What human genome genes are responsible for ethnicity, ethnogeographical features applied to forensic sciences? ...
forensic ethnicity human written 20 months ago by bioinformatics_bel20 • updated 20 months ago by pfs270
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(Closed) Is there any way to retrieve a list of start and end positions of tuberculosis genome genes?
... Is there any way to retrieve a list of start and end positions of tuberculosis genome genes automatically? I have a list of TB drug resistance genes: ebmB embR Rv3124 Rv3125c Rv3126 Rv0340 iniA iniB iniC rmlA2 rmlD inhA ethA gyrA gyrB ...
software tuberculosis resistance positions written 20 months ago by bioinformatics_bel20 • updated 20 months ago by genomax69k
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How to run BG7 jar as a standalone application? Is there any cookbook and sample cases?
... How to run BG7 jar as a standalone application? Is there any cookbook on it and sample cases? I want to use it in my software calling it from .sh script with GNU parallel. Not clear what parameters to write to produce annotations on the Velvet`s or similar assembler output. Thx. ...
software bg7 pipe written 20 months ago by bioinformatics_bel20
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
... How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST? Thx. ...
assembly bg7 prokka velvet rast written 20 months ago by bioinformatics_bel20
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
... Has anyone tried to run SNPEff, Bedtools, BEDOPS or Prokka with GNU parallel or a similar batch engine? I need some code samples and patterns/example, pls. Thx. ...
bedtools parallel snpeff gnu prokka written 20 months ago by bioinformatics_bel20 • updated 20 months ago by WouterDeCoster40k

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