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Comment: Comment: large number of contigs after assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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3.5k
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Comment: Comment: large number of contigs after assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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1
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3.3k
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Comment: Comment: How to align fastq files against a reference assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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1.9k
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Comment: Comment: Is it possible to do mummerplot with reference and query sequences that have man
2.7 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: fasta index file too big for genome browsers
2.7 years ago by samuel.a.odonnell ▴ 520
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3.3k
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Comment: Comment: How to align fastq files against a reference assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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3.3k
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Answer: Answer: Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
2.7 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.7 years ago by samuel.a.odonnell ▴ 520
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983
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.7 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.7 years ago by samuel.a.odonnell ▴ 520
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983
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.7 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: De novo genome assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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678
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Comment: Comment: vcf file genotypes
2.7 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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759
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Comment: Comment: How to get uniform data yields per barcode in nanopore sequencing
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Generating a dotplot following ragtag scaffolding
2.8 years ago by samuel.a.odonnell ▴ 520
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1.7k
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Comment: Comment: Flye assembly, increased coverage results in decreased N50
2.8 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by samuel.a.odonnell ▴ 520
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1
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1.3k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
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1
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1.3k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
1
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1
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1.3k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
2.8 years ago by samuel.a.odonnell ▴ 520
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1.1k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.9 years ago by samuel.a.odonnell ▴ 520
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1
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1.1k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.9 years ago by samuel.a.odonnell ▴ 520
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992
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Comment: Comment: Scaffolding of bacterial genome assemblies
2.9 years ago by samuel.a.odonnell ▴ 520
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1.7k
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Comment: Comment: LOW BUSCO Score for De novo genome assembly
2.9 years ago by samuel.a.odonnell ▴ 520
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1.1k
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Comment: Comment: Problem creating a reference genome
3.0 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: RagTag assembly after spades
3.0 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: Variant calling from comparison of assembled genomes where there is only one r
3.1 years ago by samuel.a.odonnell ▴ 520
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0
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2.2k
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Comment: Comment: Dealing with chimeric assembly contigs
3.1 years ago by samuel.a.odonnell ▴ 520
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2.2k
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Comment: Comment: Dealing with chimeric assembly contigs
3.1 years ago by samuel.a.odonnell ▴ 520
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2.2k
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Answer: Answer: visualize phased vcf file
3.1 years ago by samuel.a.odonnell ▴ 520
3
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10.0k
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Answer: Answer: samtools multithreads
3.1 years ago by samuel.a.odonnell ▴ 520
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1
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1.3k
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Comment: C: structural variant discovery from highly mutated viral population using nanopore
3.1 years ago by samuel.a.odonnell ▴ 520
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2.4k
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Comment: C: Basecalling of Nanopore Raw file
3.1 years ago by samuel.a.odonnell ▴ 520
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1
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2.4k
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Comment: C: mummerplot results interpretation
3.2 years ago by samuel.a.odonnell ▴ 520
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2
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2.4k
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Comment: C: mummerplot results interpretation
3.2 years ago by samuel.a.odonnell ▴ 520
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1.8k
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Answer: A: extracting fastq's from a vcf file
3.2 years ago by samuel.a.odonnell ▴ 520
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609
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Comment: C: anyway to save contaminated samples?
3.2 years ago by samuel.a.odonnell ▴ 520
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917
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Comment: C: Assembly based structural variants call from bacterial genome
3.2 years ago by samuel.a.odonnell ▴ 520
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1
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917
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Comment: C: Assembly based structural variants call from bacterial genome
3.2 years ago by samuel.a.odonnell ▴ 520
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672
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Comment: C: Strategy for sequencing genomes of nascent polyploid species
3.3 years ago by samuel.a.odonnell ▴ 520
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959
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Comment: C: structural variants from mauve
3.4 years ago by samuel.a.odonnell ▴ 520
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1.0k
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Comment: C: Building pangenome reference
3.4 years ago by samuel.a.odonnell ▴ 520
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2.6k
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Comment: C: False positives in manta structural variant calling
3.4 years ago by samuel.a.odonnell ▴ 520
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0
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2.6k
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Comment: C: Combining nanopore libraries
3.4 years ago by samuel.a.odonnell ▴ 520
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