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450
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Comment: Comment: MissAssembly Correction
19 days ago by samuel.a.odonnell ▴ 460
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450
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Comment: Comment: MissAssembly Correction
26 days ago by samuel.a.odonnell ▴ 460
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292
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
7 weeks ago by samuel.a.odonnell ▴ 460
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372
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Comment: Comment: Problem with NextDenovo fungal assembly
7 weeks ago by samuel.a.odonnell ▴ 460
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0
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239
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Comment: Comment: Tools for annotating predicted genes?
8 weeks ago by samuel.a.odonnell ▴ 460
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667
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Comment: Comment: minimap2, before or after assembly?
3 months ago by samuel.a.odonnell ▴ 460
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404
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Comment: Comment: Filtering mitochondrion reads from FastQ files
3 months ago by samuel.a.odonnell ▴ 460
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0
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456
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
3 months ago by samuel.a.odonnell ▴ 460
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643
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Comment: Comment: Low basecalling of raw ONT data
4 months ago by samuel.a.odonnell ▴ 460
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0
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487
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
4 months ago by samuel.a.odonnell ▴ 460
2
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1
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372
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
5 months ago by samuel.a.odonnell ▴ 460
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446
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Comment: Comment: Help with geom_dotplot() script
6 months ago by samuel.a.odonnell ▴ 460
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368
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Comment: Comment: How can I make a reference genome from multiple genomes?
6 months ago by samuel.a.odonnell ▴ 460
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1
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259
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 6 months ago by ▴ 920 • written 6 months ago by ▴ 460
2
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1
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477
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Answer: Answer: How do I input one fasta file for an entire reference genome?
6 months ago by samuel.a.odonnell ▴ 460
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1
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321
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Comment: Comment: Unexpected coverage across genome
6 months ago by samuel.a.odonnell ▴ 460
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463
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
7 months ago by samuel.a.odonnell ▴ 460
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0
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327
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Comment: Comment: Convert fasta to Fastq/bam
7 months ago by samuel.a.odonnell ▴ 460
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0
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526
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Comment: Comment: Variant calling for scaffold genome
9 months ago by samuel.a.odonnell ▴ 460
1
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1
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484
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Comment: Comment: A question about SPAdes
9 months ago by samuel.a.odonnell ▴ 460
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1
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538
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Comment: Comment: Method to fill N gaps with de novo assembly
10 months ago by samuel.a.odonnell ▴ 460
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0
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341
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Comment: Comment: comparing and aligning 2 de novo genomes
10 months ago by samuel.a.odonnell ▴ 460
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1
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341
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Comment: Comment: comparing and aligning 2 de novo genomes
10 months ago by samuel.a.odonnell ▴ 460
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0
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568
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Comment: Comment: Incomplete TE identification by repeatmasker
10 months ago by samuel.a.odonnell ▴ 460
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1
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568
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Comment: Comment: Incomplete TE identification by repeatmasker
10 months ago by samuel.a.odonnell ▴ 460
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1
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568
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Comment: Comment: Incomplete TE identification by repeatmasker
10 months ago by samuel.a.odonnell ▴ 460
1
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0
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468
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
10 months ago by samuel.a.odonnell ▴ 460
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0
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307
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Comment: Comment: Correct de novo assembly workflow and mapping
10 months ago by samuel.a.odonnell ▴ 460
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1
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381
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Comment: Comment: Considering two and more variation in polyploidy
10 months ago by samuel.a.odonnell ▴ 460
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1
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381
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Comment: Comment: Considering two and more variation in polyploidy
10 months ago by samuel.a.odonnell ▴ 460
2
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1
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511
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Comment: Comment: Why he/she disabled the base calling in Guppy?
11 months ago by samuel.a.odonnell ▴ 460
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0
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1.2k
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Comment: Comment: Re-assembly assembled genomes
13 months ago by samuel.a.odonnell ▴ 460
0
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0
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266
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Detecting novel material inside repeat array
genome repeat alignment
17 months ago by samuel.a.odonnell ▴ 460
0
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1
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799
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Comment: Comment: How are two alleles typically represented in a whole genome sequence?
17 months ago by samuel.a.odonnell ▴ 460
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0
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385
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Comment: Comment: Structural variation nomenclature ambiguity
17 months ago by samuel.a.odonnell ▴ 460
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0
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1.2k
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
18 months ago by samuel.a.odonnell ▴ 460
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1
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1.2k
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
18 months ago by samuel.a.odonnell ▴ 460
1
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0
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2.0k
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Comment: Comment: large number of contigs after assembly
18 months ago by samuel.a.odonnell ▴ 460
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1
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2.0k
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Comment: Comment: large number of contigs after assembly
18 months ago by samuel.a.odonnell ▴ 460
0
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1
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2.0k
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Comment: Comment: large number of contigs after assembly
18 months ago by samuel.a.odonnell ▴ 460
0
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1
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2.0k
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Comment: Comment: large number of contigs after assembly
18 months ago by samuel.a.odonnell ▴ 460
1
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0
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2.0k
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Comment: Comment: large number of contigs after assembly
18 months ago by samuel.a.odonnell ▴ 460
0
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1
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1.6k
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Comment: Comment: How to align fastq files against a reference assembly
18 months ago by samuel.a.odonnell ▴ 460
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1
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1.3k
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Comment: Comment: Is it possible to do mummerplot with reference and query sequences that have man
18 months ago by samuel.a.odonnell ▴ 460
0
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0
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906
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Comment: Comment: fasta index file too big for genome browsers
18 months ago by samuel.a.odonnell ▴ 460
0
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1
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1.6k
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Comment: Comment: How to align fastq files against a reference assembly
18 months ago by samuel.a.odonnell ▴ 460
2
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1
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1.9k
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Answer: Answer: Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
19 months ago by samuel.a.odonnell ▴ 460
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0
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810
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
19 months ago by samuel.a.odonnell ▴ 460
1
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1
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719
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
19 months ago by samuel.a.odonnell ▴ 460
1
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1
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810
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
19 months ago by samuel.a.odonnell ▴ 460
100 results • Page 1 of 2
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