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Comment: Comment: Polishing raw nanopore reads with Pacbio
5 months ago by samuel.a.odonnell ▴ 600
0
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0
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780
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Comment: Comment: Polishing raw nanopore reads with Pacbio
5 months ago by samuel.a.odonnell ▴ 600
1
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5
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780
views
Polishing raw nanopore reads with Pacbio
polishing assembly
5 months ago by samuel.a.odonnell ▴ 600
0
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0
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653
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Comment: Comment: Type of Pangenome Type/program to use for fungal isolates of the same species, b
6 months ago by samuel.a.odonnell ▴ 600
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1
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1.6k
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Comment: Comment: Phylogenetic tree from whole genome using BUSCO
7 months ago by samuel.a.odonnell ▴ 600
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3.0k
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
10 months ago by samuel.a.odonnell ▴ 600
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0
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781
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Comment: Comment: Assembly Question
12 months ago by samuel.a.odonnell ▴ 600
1
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0
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915
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Comment: Comment: Oxford Nanopore Sequencing Output Related
14 months ago by samuel.a.odonnell ▴ 600
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0
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1.5k
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Comment: Comment: Eukaryotic genome Assembly
14 months ago by samuel.a.odonnell ▴ 600
1
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1
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617
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Comment: Comment: genome assembly for a pathogens
15 months ago by samuel.a.odonnell ▴ 600
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1
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2.1k
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Comment: Comment: SPADES Result Comparison
15 months ago by samuel.a.odonnell ▴ 600
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0
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771
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Comment: Comment: Mismatch between number of reads in fastq and mapped reads
15 months ago by samuel.a.odonnell ▴ 600
1
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0
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3.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
15 months ago by samuel.a.odonnell ▴ 600
1
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1
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3.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
16 months ago by samuel.a.odonnell ▴ 600
1
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1
reply
3.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
16 months ago by samuel.a.odonnell ▴ 600
1
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0
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3.0k
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Comment: Comment: Best practices in Fungal Genome Assembly
16 months ago by samuel.a.odonnell ▴ 600
2
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2
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2.6k
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Comment: Comment: Removing duplicates
17 months ago by samuel.a.odonnell ▴ 600
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1
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2.6k
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Comment: Comment: Removing duplicates
17 months ago by samuel.a.odonnell ▴ 600
0
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0
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1.4k
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
23 months ago by samuel.a.odonnell ▴ 600
1
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0
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5.2k
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Comment: Comment: Short Read Data Genome Assembly
2.0 years ago by samuel.a.odonnell ▴ 600
1
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1
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2.6k
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Comment: Comment: The GATK "The given bam input has no sample names." error
2.1 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.7k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
2.1 years ago by samuel.a.odonnell ▴ 600
0
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1
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1.7k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
2.1 years ago by samuel.a.odonnell ▴ 600
0
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1
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947
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Comment: Comment: Expect heterozygous variant from reads
2.2 years ago by samuel.a.odonnell ▴ 600
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0
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1.7k
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
2.3 years ago by samuel.a.odonnell ▴ 600
1
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1
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2.8k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
2.4 years ago by samuel.a.odonnell ▴ 600
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0
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1.8k
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Comment: Comment: MissAssembly Correction
2.6 years ago by samuel.a.odonnell ▴ 600
0
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1
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1.8k
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Comment: Comment: MissAssembly Correction
2.6 years ago by samuel.a.odonnell ▴ 600
0
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0
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857
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
2.6 years ago by samuel.a.odonnell ▴ 600
2
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1
reply
1.9k
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Comment: Comment: Problem with NextDenovo fungal assembly
2.7 years ago by samuel.a.odonnell ▴ 600
1
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0
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752
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Comment: Comment: Tools for annotating predicted genes?
2.7 years ago by samuel.a.odonnell ▴ 600
0
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0
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2.5k
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Comment: Comment: minimap2, before or after assembly?
2.8 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.3k
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Comment: Comment: Filtering mitochondrion reads from FastQ files
2.8 years ago by samuel.a.odonnell ▴ 600
1
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0
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2.2k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
2.8 years ago by samuel.a.odonnell ▴ 600
0
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0
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2.1k
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Comment: Comment: Low basecalling of raw ONT data
2.9 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.8k
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
2.9 years ago by samuel.a.odonnell ▴ 600
2
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1
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998
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
3.0 years ago by samuel.a.odonnell ▴ 600
2
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0
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1.5k
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Comment: Comment: Help with geom_dotplot() script
3.0 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.2k
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Comment: Comment: How can I make a reference genome from multiple genomes?
3.0 years ago by samuel.a.odonnell ▴ 600
4
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1
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948
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 3.0 years ago by ★ 1.8k • written 3.0 years ago by ▴ 600
2
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1
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1.5k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
3.1 years ago by samuel.a.odonnell ▴ 600
1
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1
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907
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Comment: Comment: Unexpected coverage across genome
3.1 years ago by samuel.a.odonnell ▴ 600
1
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0
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1.4k
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
3.1 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.5k
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Comment: Comment: Convert fasta to Fastq/bam
3.1 years ago by samuel.a.odonnell ▴ 600
0
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0
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1.5k
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Comment: Comment: Variant calling for scaffold genome
3.3 years ago by samuel.a.odonnell ▴ 600
1
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1
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1.4k
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Comment: Comment: A question about SPAdes
3.3 years ago by samuel.a.odonnell ▴ 600
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1
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1.7k
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Comment: Comment: Method to fill N gaps with de novo assembly
3.3 years ago by samuel.a.odonnell ▴ 600
0
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0
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982
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Comment: Comment: comparing and aligning 2 de novo genomes
3.3 years ago by samuel.a.odonnell ▴ 600
0
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1
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982
views
Comment: Comment: comparing and aligning 2 de novo genomes
3.3 years ago by samuel.a.odonnell ▴ 600
0
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0
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2.0k
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Comment: Comment: Incomplete TE identification by repeatmasker
3.4 years ago by samuel.a.odonnell ▴ 600
126 results • Page 1 of 3
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