User: mohammedtoufiq91
mohammedtoufiq91 • 50
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Posts by mohammedtoufiq91
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... Thank you so much. @Benn ...
written 9 days ago by
mohammedtoufiq91 • 50
4
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... Hi,
I have two different *.csv files with different column headers except one column, i.e, one with the gene symbols and expression data (samples), and the other with the gene symbols and phenotypic data/attributes, in both the files, one column (gene symbols) is same. I would like to merge both th ...
written 9 days ago by
mohammedtoufiq91 • 50
• updated
9 days ago by
Jean-Karim Heriche ♦ 20k
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... Thank you. Just one more question,
In case, I would like to print only specific columns as shown in the attached example data file from the O.Value1 to O.Value13 columns without the populating other columns, how can I deal with it? And later, print separately (-1) *O.Values as a different list. Doe ...
written 29 days ago by
mohammedtoufiq91 • 50
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... [example data][1]
[1]: https://www.dropbox.com/s/zy75gbmk8ir3fwo/template_example.xlsx?dl=0
example data attached in the link.
Where,
O.Value1 = Value1 of [gene_1, gene_2, gene_3, gene_4, gene_5] - [Value1 of Normalizer]
Negative.O.Value1 = (-1) *O.Value1
till
O.Value13
Negative.O.Valu ...
written 29 days ago by
mohammedtoufiq91 • 50
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... Thank you Tokhir. This was helpful and worked fine.
But if I have hundreds of values/sample columns in the data file, for instance as given below:
|Feature| |Value| |Value2| |Value3| |Value4| |Value5| |Value...n|
How could this be modified? For this purpose, can I change the function to
df1$ ...
written 29 days ago by
mohammedtoufiq91 • 50
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... I am new to programming in R and Python, however have some basics. I have a technical question about computation. I would like to know if there are any functions for performing subtraction of all features(rows) to a particular value (row) from the same data list. I would like to obtain the output_va ...
written 29 days ago by
mohammedtoufiq91 • 50
• updated
29 days ago by
zx8754 ♦ 8.2k
1
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... Hi,
I would like to know if I can import the data into the ddCt package in the matrix format for the analysing the qRTPCR data. If possible, how could this be done?
I have a .txt file with 260 genes (rows) and 27 samples (columns).
Best Regards,
Toufiq ...
written 4 weeks ago by
mohammedtoufiq91 • 50
0
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... Hi,
I created a qPCRset using HTqPCR package for analysing the RTPCR data from BioMark Fluidigm setup. I am facing issues while grouping the samples for the data visualization and analysis. would like to group the samples based on the "Type" parameter such as 1, 4, and 6. However, getting an error ...
written 4 weeks ago by
mohammedtoufiq91 • 50
0
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163
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... Hi,
I am interested to integrate Metagenomics and transcriptomics (qRT-PCR) data. I would like to know if there are any tools to perform the integrated analysis using Metagenomics and transcriptomics results or any resources would be helpful.
Best Regards,
Toufiq ...
written 3 months ago by
mohammedtoufiq91 • 50
0
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193
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... Hi,
I have a question on qRT-PCR data analysis. The gene panel has more than 200 genes along with the multiple reference/housekeeping genes. I have 50 paired samples (i.e Before vs After Vitamin supplementation) and 6 pooled controls (3 Pooled controls in one plate and 3 in another plate as interpl ...
written 3 months ago by
mohammedtoufiq91 • 50
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