User: mohammedtoufiq91
mohammedtoufiq91 • 90
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Posts by mohammedtoufiq91
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... @ Kevin Blighe ,
Noted. Thank you very much. This is helpful. ...
written 14 days ago by
mohammedtoufiq91 • 90
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... @ Kevin Blighe,
Thank you very much for the suggestions. Can I also perform 3D visualisation using the pcatools?
Sometimes, it does not show the **Reply** button to write back so I had to add the text in the **comment** section. ...
written 14 days ago by
mohammedtoufiq91 • 90
9
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6 follow
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... Hi,
I am working on the expression datasets that has multiple-variables. I am using the `FactoMineR` and `pca3d` libraries for this purpose and was able to distinguish two factor levels belonging to a one variable column. However, I am not able to perform the PCA on the two variable columns that ha ...
written 15 days ago by
mohammedtoufiq91 • 90
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... @ zx8754 ,
Thank you very much for the assistance. ...
written 16 days ago by
mohammedtoufiq91 • 90
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... @ zx8754 ,
Excellent. Looks great! Thank you.
In my case, I should specify each ID manually as I have 100 of them as below
d <- Test_v1_ID[ Test_v1_ID$X12 == "M10.1", "M10.2", "M10.3", "M10.4", "M10.9", ......... ]
or just any easier method? ...
written 16 days ago by
mohammedtoufiq91 • 90
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... Hi @zx8754,
I was trying a test run with your R code to understand further, however I keep getting the syntax errors. Am I missing something here.
dash <- d %>%
arrange(Genes, Timepoints) %>%
group_by(Genes) %>%
mutate(x1 = if_elseis.na(value), lag(Timepoints), ...
written 16 days ago by
mohammedtoufiq91 • 90
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... @ zx8754 ,
thank you. Here is the data.
dput(Test_v1_ID)
structure(list(Genes = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L,
4L, 4L, 4L, 4L, 4L, 5L, 5L, ...
written 16 days ago by
mohammedtoufiq91 • 90
0
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126
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... @ ATpoint,
Apologies for the confusion. This would not be repeated going forward. ...
written 17 days ago by
mohammedtoufiq91 • 90
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126
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... @ zx8754,
Excellent. This fixed the issue.
Another question, as shown in the figure timepoint T10, there is no data point which is because of the missing values for that particular timepoint, is there a way to display or represent it by dotted line as there are many such line plots or should it re ...
written 17 days ago by
mohammedtoufiq91 • 90
9
votes
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answers
126
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... Hi,
I am working on the line plot using ggplot2 library. I notice that the data point are not aligned correctly on the x-axis (different timepoints). Below is the code that I ran in R and image of the line plot. In the Image, as shown data point from T5 is aligned on T6 and T20 is not aligned as we ...
written 17 days ago by
mohammedtoufiq91 • 90
• updated
16 days ago by
zx8754 ♦ 8.8k
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