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Comment:
Comment: JoinLayers to find markers in merged or integrated analysis in seurat
9 months ago by
mohammedtoufiq91
▴ 260
2
votes
2
replies
5.6k
views
JoinLayers to find markers in merged or integrated analysis in seurat
scRNA-seq
seurat
FindMarkers
9 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
2.1k
views
Comment:
Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
11 months ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
2.1k
views
Comment:
Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
11 months ago by
mohammedtoufiq91
▴ 260
2
votes
4
replies
2.1k
views
How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objects in R?
scrna-seq
seurat
signac
11 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
4.7k
views
Comment:
Comment: Illumina HumanHT-12 V3.0 expression beadchip reading data
19 months ago by
mohammedtoufiq91
▴ 260
1
vote
0
replies
1.7k
views
Comment:
Comment: How to retrieve Microarray probe annotations
21 months ago by
mohammedtoufiq91
▴ 260
4
votes
2
replies
1.7k
views
How to retrieve Microarray probe annotations
org.Hs.eg.db
annotables
AnnotationDbi
Microarray
R
21 months ago by
mohammedtoufiq91
▴ 260
3
votes
4
replies
2.5k
views
Issues marking genes in ComplexHeatmap
pheatmap
complexheatmap
heatmap
ggplot2
R
updated 5 months ago by
Filipe
• 0 • written 21 months ago by
mohammedtoufiq91
▴ 260
3
votes
1
reply
2.5k
views
Answer:
Answer: Issues marking genes in ComplexHeatmap
21 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
2.5k
views
Comment:
Comment: Issues marking genes in ComplexHeatmap
21 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.7k
views
Comment:
Comment: Question about RNA-Seq data alignment
22 months ago by
mohammedtoufiq91
▴ 260
1
vote
0
replies
1.7k
views
Comment:
Comment: Question about RNA-Seq data alignment
22 months ago by
mohammedtoufiq91
▴ 260
7
votes
9
replies
1.7k
views
Question about RNA-Seq data alignment
STAR
Alignment
BBMAP
RNA-Seq
Bowtie
22 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.7k
views
Comment:
Comment: Question about RNA-Seq data alignment
22 months ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
1.7k
views
Comment:
Comment: Question about RNA-Seq data alignment
22 months ago by
mohammedtoufiq91
▴ 260
1
vote
1
reply
1.0k
views
Comment:
Comment: How to map and annotate gene symbols to gene type?
22 months ago by
mohammedtoufiq91
▴ 260
5
votes
3
replies
1.0k
views
How to map and annotate gene symbols to gene type?
Ensembl
RefSeq
UCSC
biomart
RNA-Seq
updated 22 months ago by
GenoMax
148k • written 22 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.6k
views
Comment:
Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
23 months ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
1.6k
views
Comment:
Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
23 months ago by
mohammedtoufiq91
▴ 260
2
votes
4
replies
1.6k
views
Unable to run RSEM because of error rsem-parse-alignments : No such file or directory
RNA-Seq
Bowtie2
RSEM
Boost
23 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
593
views
How to identify mitochondrial contamination in RNAseq and QC data?
QC
FastQC
MultiQC
alignment
rna-seq
23 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
2.0k
views
Comment:
Comment: Possibility of marking genes of interest by in ComplexHeatmap
24 months ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
2.0k
views
Comment:
Comment: Possibility of marking genes of interest by in ComplexHeatmap
24 months ago by
mohammedtoufiq91
▴ 260
5
votes
4
replies
2.0k
views
Possibility of marking genes of interest by in ComplexHeatmap
heatmap
ggplot2
R
complexheatmap
24 months ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.7k
views
Comment:
Comment: Plot heatmap by average based on sample groups
24 months ago by
mohammedtoufiq91
▴ 260
2
votes
2
replies
1.7k
views
Plot heatmap by average based on sample groups
pheatmap
complexheatmap
heatmap
ggplot2
R
24 months ago by
mohammedtoufiq91
▴ 260
1
vote
0
replies
426
views
How to find miRNAs targeting genes using a list in R?
PicTar
miRBase
miRNA
PITA
R
2.0 years ago by
mohammedtoufiq91
▴ 260
1
vote
1
reply
934
views
Representation of variables in PCA
ggplot2
biplot
R
pcatools
pca
updated 2.2 years ago by
raphael.B
▴ 520 • written 2.2 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
4.0k
views
Comment:
Comment: How to adjust font size of row_split labels in ComplexHeatmap R package
2.5 years ago by
mohammedtoufiq91
▴ 260
5
votes
2
replies
4.0k
views
How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap
ComplexHeatmap
R
labels
updated 2.5 years ago by
cpad0112
21k • written 2.5 years ago by
mohammedtoufiq91
▴ 260
1
vote
3
replies
1.9k
views
Help with plotting heatmap with both row and column label annotations
pheatmap
ComplexHeatmap
R
Heatmap
annotations
updated 2.5 years ago by
Trivas
★ 1.8k • written 2.5 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.9k
views
Comment:
Comment: Help with plotting heatmap with both row and column label annotations
2.5 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.5k
views
Comment:
Comment: Extraction of high variance or contributing genes using pcatools
2.5 years ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
1.5k
views
Comment:
Comment: Extraction of high variance or contributing genes using pcatools
2.5 years ago by
mohammedtoufiq91
▴ 260
5
votes
5
replies
1.5k
views
Extraction of high variance or contributing genes using pcatools
PCAtools
FactoMineR
R
prcomp
PCA
2.5 years ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
888
views
Comment:
Comment: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
2.6 years ago by
mohammedtoufiq91
▴ 260
4
votes
3
replies
888
views
How to label genes passing the p-value and fold change cut-offs in EnhancedVolcano?
EnhancedVolcano
volcano
label
R
genes
updated 2.6 years ago by
GenoMax
148k • written 2.6 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.3k
views
Comment:
Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.6 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.3k
views
Comment:
Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.6 years ago by
mohammedtoufiq91
▴ 260
5
votes
4
replies
1.3k
views
Unable to open pdf file of volcano plots created using many group comparisons from EnhancedVolcano package in R
tidyverse
forloops
EnhancedVolcano
volcano
R
2.6 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.8k
views
Comment:
Comment: Error in ComplexHeatmap while adding barplot as column annotations
2.6 years ago by
mohammedtoufiq91
▴ 260
2
votes
2
replies
1.8k
views
Error in ComplexHeatmap while adding barplot as column annotations
ComplexHeatmap
heatmap
barplot
R
annotation
2.6 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
5.0k
views
Comment:
Comment: How to add color scheme for many groups in PCA using R?
2.9 years ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
5.0k
views
Comment:
Comment: How to add color scheme for many groups in PCA using R?
2.9 years ago by
mohammedtoufiq91
▴ 260
6
votes
4
replies
5.0k
views
How to add color scheme for many groups in PCA using R?
R
biplot
PCA
PCAtools
ggplot2
2.9 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
1.7k
views
Comment:
Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.9 years ago by
mohammedtoufiq91
▴ 260
0
votes
1
reply
1.7k
views
Comment:
Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.9 years ago by
mohammedtoufiq91
▴ 260
6
votes
4
replies
1.7k
views
Batch effect correction: Input data format for removeBatchEffect from limma package
R
effects
limma
batch
removeBatchEffect
updated 2.9 years ago by
Gordon Smyth
★ 7.7k • written 2.9 years ago by
mohammedtoufiq91
▴ 260
0
votes
0
replies
9.4k
views
Comment:
Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
2.9 years ago by
mohammedtoufiq91
▴ 260
191 results • Page
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