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Comment: Comment: JoinLayers to find markers in merged or integrated analysis in seurat
9 weeks ago by mohammedtoufiq91 ▴ 250
2
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2
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1.2k
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JoinLayers to find markers in merged or integrated analysis in seurat
scRNA-seq seurat FindMarkers
9 weeks ago by mohammedtoufiq91 ▴ 250
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
3 months ago by mohammedtoufiq91 ▴ 250
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1
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937
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
3 months ago by mohammedtoufiq91 ▴ 250
2
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4
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937
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How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objects in R?
scrna-seq seurat signac
3 months ago by mohammedtoufiq91 ▴ 250
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4.1k
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Comment: Comment: Illumina HumanHT-12 V3.0 expression beadchip reading data
12 months ago by mohammedtoufiq91 ▴ 250
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1.2k
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Comment: Comment: How to retrieve Microarray probe annotations
13 months ago by mohammedtoufiq91 ▴ 250
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2
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1.2k
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How to retrieve Microarray probe annotations
org.Hs.eg.db annotables AnnotationDbi Microarray R
13 months ago by mohammedtoufiq91 ▴ 250
2
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3
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1.7k
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Issues marking genes in ComplexHeatmap
pheatmap complexheatmap heatmap ggplot2 R
13 months ago by mohammedtoufiq91 ▴ 250
2
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0
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1.7k
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Answer: Answer: Issues marking genes in ComplexHeatmap
13 months ago by mohammedtoufiq91 ▴ 250
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0
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1.7k
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Comment: Comment: Issues marking genes in ComplexHeatmap
13 months ago by mohammedtoufiq91 ▴ 250
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0
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1.2k
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Comment: Comment: Question about RNA-Seq data alignment
14 months ago by mohammedtoufiq91 ▴ 250
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0
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1.2k
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Comment: Comment: Question about RNA-Seq data alignment
14 months ago by mohammedtoufiq91 ▴ 250
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9
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1.2k
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Question about RNA-Seq data alignment
STAR Alignment BBMAP RNA-Seq Bowtie
14 months ago by mohammedtoufiq91 ▴ 250
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0
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1.2k
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Comment: Comment: Question about RNA-Seq data alignment
14 months ago by mohammedtoufiq91 ▴ 250
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1
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1.2k
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Comment: Comment: Question about RNA-Seq data alignment
14 months ago by mohammedtoufiq91 ▴ 250
1
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1
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769
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Comment: Comment: How to map and annotate gene symbols to gene type?
14 months ago by mohammedtoufiq91 ▴ 250
5
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3
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769
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How to map and annotate gene symbols to gene type?
Ensembl RefSeq UCSC biomart RNA-Seq
updated 14 months ago by 141k • written 14 months ago by ▴ 250
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1.3k
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
15 months ago by mohammedtoufiq91 ▴ 250
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1
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1.3k
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
15 months ago by mohammedtoufiq91 ▴ 250
2
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4
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1.3k
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Unable to run RSEM because of error rsem-parse-alignments : No such file or directory
RNA-Seq Bowtie2 RSEM Boost
15 months ago by mohammedtoufiq91 ▴ 250
0
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0
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496
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How to identify mitochondrial contamination in RNAseq and QC data?
QC FastQC MultiQC alignment rna-seq
16 months ago by mohammedtoufiq91 ▴ 250
0
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0
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1.7k
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
16 months ago by mohammedtoufiq91 ▴ 250
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1
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1.7k
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
16 months ago by mohammedtoufiq91 ▴ 250
5
votes
4
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1.7k
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Possibility of marking genes of interest by in ComplexHeatmap
heatmap ggplot2 R complexheatmap
16 months ago by mohammedtoufiq91 ▴ 250
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0
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1.2k
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Comment: Comment: Plot heatmap by average based on sample groups
16 months ago by mohammedtoufiq91 ▴ 250
2
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2
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1.2k
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Plot heatmap by average based on sample groups
pheatmap complexheatmap heatmap ggplot2 R
16 months ago by mohammedtoufiq91 ▴ 250
1
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0
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320
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How to find miRNAs targeting genes using a list in R?
PicTar miRBase miRNA PITA R
16 months ago by mohammedtoufiq91 ▴ 250
1
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1
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813
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Representation of variables in PCA
ggplot2 biplot R pcatools pca
updated 19 months ago by ▴ 520 • written 19 months ago by ▴ 250
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0
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2.7k
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Comment: Comment: How to adjust font size of row_split labels in ComplexHeatmap R package
22 months ago by mohammedtoufiq91 ▴ 250
5
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2
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2.7k
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How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap ComplexHeatmap R labels
updated 22 months ago by 21k • written 22 months ago by ▴ 250
1
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3
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1.5k
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Help with plotting heatmap with both row and column label annotations
pheatmap ComplexHeatmap R Heatmap annotations
updated 22 months ago by ★ 1.7k • written 22 months ago by ▴ 250
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0
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1.5k
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Comment: Comment: Help with plotting heatmap with both row and column label annotations
22 months ago by mohammedtoufiq91 ▴ 250
0
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0
replies
1.2k
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
22 months ago by mohammedtoufiq91 ▴ 250
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1
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1.2k
views
Comment: Comment: Extraction of high variance or contributing genes using pcatools
22 months ago by mohammedtoufiq91 ▴ 250
5
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5
replies
1.2k
views
Extraction of high variance or contributing genes using pcatools
PCAtools FactoMineR R prcomp PCA
22 months ago by mohammedtoufiq91 ▴ 250
0
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1
reply
729
views
Comment: Comment: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
24 months ago by mohammedtoufiq91 ▴ 250
4
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3
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729
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How to label genes passing the p-value and fold change cut-offs in EnhancedVolcano?
EnhancedVolcano volcano label R genes
updated 24 months ago by 141k • written 24 months ago by ▴ 250
0
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0
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1.0k
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
24 months ago by mohammedtoufiq91 ▴ 250
0
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0
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1.0k
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
24 months ago by mohammedtoufiq91 ▴ 250
5
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4
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1.0k
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Unable to open pdf file of volcano plots created using many group comparisons from EnhancedVolcano package in R
tidyverse forloops EnhancedVolcano volcano R
24 months ago by mohammedtoufiq91 ▴ 250
0
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0
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1.2k
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Comment: Comment: Error in ComplexHeatmap while adding barplot as column annotations
24 months ago by mohammedtoufiq91 ▴ 250
2
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2
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1.2k
views
Error in ComplexHeatmap while adding barplot as column annotations
ComplexHeatmap heatmap barplot R annotation
24 months ago by mohammedtoufiq91 ▴ 250
0
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0
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4.0k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
2.3 years ago by mohammedtoufiq91 ▴ 250
0
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1
reply
4.0k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
2.3 years ago by mohammedtoufiq91 ▴ 250
6
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4
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4.0k
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How to add color scheme for many groups in PCA using R?
R biplot PCA PCAtools ggplot2
2.3 years ago by mohammedtoufiq91 ▴ 250
0
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0
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1.4k
views
Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.3 years ago by mohammedtoufiq91 ▴ 250
0
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1
reply
1.4k
views
Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.3 years ago by mohammedtoufiq91 ▴ 250
6
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4
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1.4k
views
Batch effect correction: Input data format for removeBatchEffect from limma package
R effects limma batch removeBatchEffect
updated 2.3 years ago by ★ 7.0k • written 2.3 years ago by ▴ 250
0
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0
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7.6k
views
Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
2.3 years ago by mohammedtoufiq91 ▴ 250
191 results • Page 1 of 4
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