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1
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361
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Comment: Comment: How to retrieve Microarray probe annotations
14 days ago by mohammedtoufiq91 ▴ 210
3
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2
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361
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How to retrieve Microarray probe annotations
org.Hs.eg.db annotables AnnotationDbi Microarray R
14 days ago by mohammedtoufiq91 ▴ 210
1
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3
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483
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Issues marking genes in ComplexHeatmap
pheatmap complexheatmap heatmap ggplot2 R
19 days ago by mohammedtoufiq91 ▴ 210
1
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0
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483
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Answer: Answer: Issues marking genes in ComplexHeatmap
19 days ago by mohammedtoufiq91 ▴ 210
0
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0
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483
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Comment: Comment: Issues marking genes in ComplexHeatmap
21 days ago by mohammedtoufiq91 ▴ 210
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0
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539
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Comment: Comment: Question about RNA-Seq data alignment
6 weeks ago by mohammedtoufiq91 ▴ 210
1
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0
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539
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Comment: Comment: Question about RNA-Seq data alignment
6 weeks ago by mohammedtoufiq91 ▴ 210
7
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9
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539
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Question about RNA-Seq data alignment
STAR Alignment BBMAP RNA-Seq Bowtie
6 weeks ago by mohammedtoufiq91 ▴ 210
0
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0
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539
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Comment: Comment: Question about RNA-Seq data alignment
6 weeks ago by mohammedtoufiq91 ▴ 210
0
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1
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539
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Comment: Comment: Question about RNA-Seq data alignment
6 weeks ago by mohammedtoufiq91 ▴ 210
1
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1
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279
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Comment: Comment: How to map and annotate gene symbols to gene type?
6 weeks ago by mohammedtoufiq91 ▴ 210
5
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3
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279
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How to map and annotate gene symbols to gene type?
Ensembl RefSeq UCSC biomart RNA-Seq
updated 6 weeks ago by 127k • written 6 weeks ago by ▴ 210
0
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0
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533
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
12 weeks ago by mohammedtoufiq91 ▴ 210
0
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1
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533
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
12 weeks ago by mohammedtoufiq91 ▴ 210
2
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4
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533
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Unable to run RSEM because of error rsem-parse-alignments : No such file or directory
RNA-Seq Bowtie2 RSEM Boost
12 weeks ago by mohammedtoufiq91 ▴ 210
0
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0
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291
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How to identify mitochondrial contamination in RNAseq and QC data?
QC FastQC MultiQC alignment rna-seq
3 months ago by mohammedtoufiq91 ▴ 210
0
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0
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593
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
3 months ago by mohammedtoufiq91 ▴ 210
0
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1
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593
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
3 months ago by mohammedtoufiq91 ▴ 210
5
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4
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593
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Possibility of marking genes of interest by in ComplexHeatmap
heatmap ggplot2 R complexheatmap
3 months ago by mohammedtoufiq91 ▴ 210
0
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0
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314
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Comment: Comment: Plot heatmap by average based on sample groups
3 months ago by mohammedtoufiq91 ▴ 210
2
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2
replies
314
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Plot heatmap by average based on sample groups
pheatmap complexheatmap heatmap ggplot2 R
3 months ago by mohammedtoufiq91 ▴ 210
1
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0
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151
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How to find miRNAs targeting genes using a list in R?
PicTar miRBase miRNA PITA R
3 months ago by mohammedtoufiq91 ▴ 210
1
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1
reply
535
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Representation of variables in PCA
ggplot2 biplot R pcatools pca
updated 6 months ago by ▴ 300 • written 6 months ago by ▴ 210
0
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0
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736
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Comment: Comment: How to adjust font size of row_split labels in ComplexHeatmap R package
9 months ago by mohammedtoufiq91 ▴ 210
5
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2
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736
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How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap ComplexHeatmap R labels
updated 9 months ago by 21k • written 9 months ago by ▴ 210
1
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3
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680
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Help with plotting heatmap with both row and column label annotations
pheatmap ComplexHeatmap R Heatmap annotations
updated 9 months ago by ▴ 710 • written 9 months ago by ▴ 210
0
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0
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680
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Comment: Comment: Help with plotting heatmap with both row and column label annotations
9 months ago by mohammedtoufiq91 ▴ 210
0
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0
replies
687
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
9 months ago by mohammedtoufiq91 ▴ 210
0
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1
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687
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
9 months ago by mohammedtoufiq91 ▴ 210
5
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5
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687
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Extraction of high variance or contributing genes using pcatools
PCAtools FactoMineR R prcomp PCA
9 months ago by mohammedtoufiq91 ▴ 210
0
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1
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415
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Comment: Comment: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
11 months ago by mohammedtoufiq91 ▴ 210
4
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3
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415
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How to label genes passing the p-value and fold change cut-offs in EnhancedVolcano?
EnhancedVolcano volcano label R genes
updated 11 months ago by 127k • written 11 months ago by ▴ 210
0
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0
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584
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
11 months ago by mohammedtoufiq91 ▴ 210
0
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0
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584
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
11 months ago by mohammedtoufiq91 ▴ 210
5
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4
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584
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Unable to open pdf file of volcano plots created using many group comparisons from EnhancedVolcano package in R
tidyverse forloops EnhancedVolcano volcano R
11 months ago by mohammedtoufiq91 ▴ 210
0
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0
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430
views
Comment: Comment: Error in ComplexHeatmap while adding barplot as column annotations
11 months ago by mohammedtoufiq91 ▴ 210
2
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2
replies
430
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Error in ComplexHeatmap while adding barplot as column annotations
ComplexHeatmap heatmap barplot R annotation
11 months ago by mohammedtoufiq91 ▴ 210
0
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0
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2.3k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
14 months ago by mohammedtoufiq91 ▴ 210
0
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1
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2.3k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
14 months ago by mohammedtoufiq91 ▴ 210
6
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4
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2.3k
views
How to add color scheme for many groups in PCA using R?
R biplot PCA PCAtools ggplot2
14 months ago by mohammedtoufiq91 ▴ 210
0
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0
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934
views
Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
14 months ago by mohammedtoufiq91 ▴ 210
0
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1
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934
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Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
14 months ago by mohammedtoufiq91 ▴ 210
6
votes
4
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934
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Batch effect correction: Input data format for removeBatchEffect from limma package
R effects limma batch removeBatchEffect
updated 14 months ago by ★ 5.6k • written 14 months ago by ▴ 210
0
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0
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3.7k
views
Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
14 months ago by mohammedtoufiq91 ▴ 210
0
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1
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3.7k
views
Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
14 months ago by mohammedtoufiq91 ▴ 210
2
votes
4
replies
3.7k
views
Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or missing values in 'x')
PCA PCAtools missMDA R
14 months ago by mohammedtoufiq91 ▴ 210
0
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0
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35k
views
Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
14 months ago by mohammedtoufiq91 ▴ 210
0
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0
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516
views
Comment: Comment: Combining Microarray and RNA-Seq datasets visualization and comparison
updated 15 months ago by 70k • written 15 months ago by ▴ 210
0
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1
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516
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Combining Microarray and RNA-Seq datasets visualization and comparison
ComBat microarray sva RNAseq expression gene
updated 15 months ago by 70k • written 15 months ago by ▴ 210
2
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2
replies
1.1k
views
Exporting normalized counts data from DeSeq2
DESeq2 normalization expression RNA-seq
updated 6 months ago by 38k • written 18 months ago by ▴ 210
185 results • Page 1 of 4
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