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Comment: Comment: How to download FASTQ files from the European Nucleotide Archive (ENA) to use th
11 months ago by psm ▴ 160
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Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
19 months ago by psm ▴ 160
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Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
19 months ago by psm ▴ 160
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Comment: Comment: Choice for statistical test (and R package)
22 months ago by psm ▴ 160
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1.5k
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Comment: Comment: Choice for statistical test (and R package)
22 months ago by psm ▴ 160
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3.2k
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Comment: Comment: How much RAM for scRNAseq 200K cells?
2.5 years ago by psm ▴ 160
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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7.3k
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Comment: Comment: Enrichment score of ssGSEA
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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3.9k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.2 years ago by psm ▴ 160
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.2 years ago by psm ▴ 160
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3.1k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.2 years ago by psm ▴ 160
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Comment: C: Software/Package to automatically annotate genes? Do any exist?
4.3 years ago by psm ▴ 160
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Comment: C: ChipQC doesn't run
4.6 years ago by psm ▴ 160
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4.5k
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Comment: C: Seurat Violin Plot shows counts LESS than 0?
4.7 years ago by psm ▴ 160
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3.0k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
4.8 years ago by psm ▴ 160
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3.0k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
4.8 years ago by psm ▴ 160
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Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
4.8 years ago by psm ▴ 160
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3.0k
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Comment: C: GSVA kernels: Gaussian or Poisson?
4.8 years ago by psm ▴ 160
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2.5k
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Comment: A: single cell sequencing data doublets removal tools selection
4.9 years ago by psm ▴ 160
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1
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7.1k
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Comment: C: hisat2-build indexing produces more than 8 output files
6.6 years ago by psm ▴ 160
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5.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.6 years ago by psm ▴ 160
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5.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.6 years ago by psm ▴ 160
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5.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.6 years ago by psm ▴ 160
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1
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7.1k
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Comment: C: hisat2-build indexing produces more than 8 output files
6.6 years ago by psm ▴ 160
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7.0k
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Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
6.6 years ago by psm ▴ 160
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7.0k
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Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
6.6 years ago by psm ▴ 160
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1
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7.0k
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Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
6.9 years ago by psm ▴ 160
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