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Comment: Comment: How much RAM for scRNAseq 200K cells?
4 months ago by psm ▴ 100
2
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4
replies
560
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How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 4 months ago by 3.5k • written 4 months ago by ▴ 100
0
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1
reply
284
views
Close correlation between differentially-expressed genes
rna-seq
updated 4 months ago by ▴ 120 • written 4 months ago by ▴ 100
0
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0
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1.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
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0
replies
1.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
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0
replies
1.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
votes
2
replies
1.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
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1
reply
1.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
votes
2
replies
1.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
0
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0
replies
5.2k
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Comment: Comment: Enrichment score of ssGSEA
13 months ago by psm ▴ 100
0
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1
reply
1.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
8
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19
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1.7k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
13 months ago by psm ▴ 100
0
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1
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1.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
13 months ago by psm ▴ 100
1
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0
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344
views
Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
16 months ago by psm ▴ 100
0
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0
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1.4k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
2.1 years ago by psm ▴ 100
0
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0
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1.4k
views
Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
2.1 years ago by psm ▴ 100
3
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4
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1.4k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 2.1 years ago by 70k • written 2.1 years ago by ▴ 100
4
votes
2
replies
1.6k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 2.1 years ago by 70k • written 2.1 years ago by ▴ 100
0
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0
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315
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Comment: C: Software/Package to automatically annotate genes? Do any exist?
2.2 years ago by psm ▴ 100
0
votes
2
replies
315
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Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
2.2 years ago by psm ▴ 100
1
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0
replies
1.9k
views
Comment: C: ChipQC doesn't run
2.5 years ago by psm ▴ 100
0
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0
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2.6k
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Comment: C: Seurat Violin Plot shows counts LESS than 0?
2.6 years ago by psm ▴ 100
1
vote
2
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2.6k
views
Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 2.6 years ago by 5.2k • written 2.6 years ago by ▴ 100
0
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0
replies
1.6k
views
Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
2.7 years ago by psm ▴ 100
0
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1
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1.6k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
2.7 years ago by psm ▴ 100
2
votes
6
replies
1.6k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 20 months ago by • 0 • written 2.7 years ago by ▴ 100
0
votes
2
replies
1.8k
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Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
2.7 years ago by psm ▴ 100
1
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0
replies
1.6k
views
Comment: C: GSVA kernels: Gaussian or Poisson?
2.7 years ago by psm ▴ 100
3
votes
2
replies
1.6k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 2.7 years ago by 84k • written 2.7 years ago by ▴ 100
1
vote
5
replies
1.8k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 22 months ago by 13k • written 2.7 years ago by ▴ 100
0
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1
reply
5.2k
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Answer: A: Enrichment score of ssGSEA
2.7 years ago by psm ▴ 100
0
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0
replies
1.7k
views
Comment: A: single cell sequencing data doublets removal tools selection
2.8 years ago by psm ▴ 100
0
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1
reply
5.0k
views
Comment: C: hisat2-build indexing produces more than 8 output files
4.5 years ago by psm ▴ 100
0
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0
replies
3.7k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.5 years ago by psm ▴ 100
0
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0
replies
3.7k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.5 years ago by psm ▴ 100
0
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0
replies
3.7k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.5 years ago by psm ▴ 100
13
votes
8
replies
3.7k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 4.5 years ago by ★ 2.2k • written 4.5 years ago by ▴ 100
0
votes
1
reply
5.0k
views
Comment: C: hisat2-build indexing produces more than 8 output files
4.5 years ago by psm ▴ 100
2
votes
0
replies
2.3k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
4.5 years ago by psm ▴ 100
0
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0
replies
4.0k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
4.5 years ago by psm ▴ 100
0
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1
reply
4.0k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
4.5 years ago by psm ▴ 100
6
votes
9
replies
4.0k
views
RNA-seq: How to know which paired reads come from the same original fragment?
RNA-Seq Assembly
updated 21 months ago by • 0 • written 4.8 years ago by ▴ 100
1
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1
reply
4.0k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
4.8 years ago by psm ▴ 100
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