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2
votes
3
replies
1.0k
views
Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
rna-seq
updated 9 months ago by ▴ 10 • written 9 months ago by ▴ 160
0
votes
1
reply
1.0k
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Answer: Answer: Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
9 months ago by psm ▴ 160
0
votes
0
replies
3.9k
views
Comment: Comment: How to download FASTQ files from the European Nucleotide Archive (ENA) to use th
9 months ago by psm ▴ 160
1
vote
2
replies
2.3k
views
Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
18 months ago by psm ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
18 months ago by psm ▴ 160
6
votes
7
replies
2.3k
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 6 weeks ago by ▴ 40 • written 18 months ago by ▴ 160
2
votes
2
replies
2.1k
views
Seurat: Log fold change and p value when control expression is 0
RNA-seq DGE
updated 21 months ago by 4.6k • written 21 months ago by ▴ 160
0
votes
0
replies
1.4k
views
Comment: Comment: Choice for statistical test (and R package)
21 months ago by psm ▴ 160
0
votes
1
reply
1.4k
views
Comment: Comment: Choice for statistical test (and R package)
21 months ago by psm ▴ 160
4
votes
4
replies
1.4k
views
Choice for statistical test (and R package)
RNA-seq DGE
21 months ago by psm ▴ 160
0
votes
1
reply
3.1k
views
Comment: Comment: How much RAM for scRNAseq 200K cells?
2.4 years ago by psm ▴ 160
3
votes
4
replies
3.1k
views
How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 2.4 years ago by 4.1k • written 2.4 years ago by ▴ 160
0
votes
1
reply
724
views
Close correlation between differentially-expressed genes
rna-seq
updated 2.4 years ago by ▴ 170 • written 2.4 years ago by ▴ 160
0
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0
replies
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
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0
replies
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
votes
0
replies
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
votes
2
replies
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
votes
1
reply
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
votes
2
replies
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
0
votes
0
replies
7.3k
views
Comment: Comment: Enrichment score of ssGSEA
3.1 years ago by psm ▴ 160
0
votes
1
reply
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
8
votes
19
replies
3.8k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
3.1 years ago by psm ▴ 160
0
votes
1
reply
3.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.1 years ago by psm ▴ 160
1
vote
0
replies
641
views
Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
3.4 years ago by psm ▴ 160
0
votes
0
replies
3.0k
views
Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.1 years ago by psm ▴ 160
0
votes
0
replies
3.0k
views
Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.1 years ago by psm ▴ 160
3
votes
4
replies
3.0k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 4.1 years ago by 87k • written 4.1 years ago by ▴ 160
6
votes
2
replies
4.5k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 4.1 years ago by 87k • written 4.1 years ago by ▴ 160
0
votes
0
replies
609
views
Comment: C: Software/Package to automatically annotate genes? Do any exist?
4.2 years ago by psm ▴ 160
0
votes
2
replies
609
views
Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
4.2 years ago by psm ▴ 160
1
vote
0
replies
2.8k
views
Comment: C: ChipQC doesn't run
4.5 years ago by psm ▴ 160
0
votes
0
replies
4.4k
views
Comment: C: Seurat Violin Plot shows counts LESS than 0?
4.7 years ago by psm ▴ 160
1
vote
2
replies
4.4k
views
Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 4.7 years ago by 6.2k • written 4.7 years ago by ▴ 160
0
votes
0
replies
2.9k
views
Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
4.7 years ago by psm ▴ 160
0
votes
1
reply
2.9k
views
Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
4.7 years ago by psm ▴ 160
5
votes
6
replies
2.9k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 3.7 years ago by • 0 • written 4.7 years ago by ▴ 160
0
votes
2
replies
3.3k
views
Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
4.7 years ago by psm ▴ 160
1
vote
0
replies
2.9k
views
Comment: C: GSVA kernels: Gaussian or Poisson?
4.7 years ago by psm ▴ 160
4
votes
2
replies
2.9k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 160
1
vote
5
replies
3.3k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 3.8 years ago by 13k • written 4.8 years ago by ▴ 160
0
votes
1
reply
7.3k
views
Answer: A: Enrichment score of ssGSEA
4.8 years ago by psm ▴ 160
0
votes
0
replies
2.5k
views
Comment: A: single cell sequencing data doublets removal tools selection
4.8 years ago by psm ▴ 160
0
votes
1
reply
7.0k
views
Comment: C: hisat2-build indexing produces more than 8 output files
6.5 years ago by psm ▴ 160
0
votes
0
replies
5.8k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.5 years ago by psm ▴ 160
0
votes
0
replies
5.8k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.5 years ago by psm ▴ 160
0
votes
0
replies
5.8k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
6.5 years ago by psm ▴ 160
13
votes
8
replies
5.8k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 6.5 years ago by ★ 2.4k • written 6.5 years ago by ▴ 160
0
votes
1
reply
7.0k
views
Comment: C: hisat2-build indexing produces more than 8 output files
6.5 years ago by psm ▴ 160
3
votes
0
replies
2.8k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
6.5 years ago by psm ▴ 160
0
votes
0
replies
6.9k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
6.5 years ago by psm ▴ 160
53 results • Page 1 of 2
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