Moderator: a.zielezinski
a.zielezinski ♦ 8.5k
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Andrzej Zielezinski
Posts by a.zielezinski
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Comment:
C: ClustalW multiple output files
... You can use [readseq][1] for format conversion (e.g. Nexus > Fasta).
[1]: http://manpages.ubuntu.com/manpages/xenial/man1/readseq.1.html ...
written 5 days ago by
a.zielezinski ♦ 8.5k
0
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2
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86
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2
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Comment:
C: tools for finding paralogues
... What organisms do you work on? ...
written 10 days ago by
a.zielezinski ♦ 8.5k
0
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5
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3.9k
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5
answers
... Thanks. You've saved my day. ...
written 3 months ago by
a.zielezinski ♦ 8.5k
5
votes
2
answers
350
views
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... The perl script, [pfam_scan.pl][1] (from EBI) was developed for this exact purpose.
`pfam_scan.pl` searches one or more sequences for matching Pfam domains using standard `hmmscan`. In addition, the program groups together families which have a common evolutionary ancestor in clans. Where there a ...
written 3 months ago by
a.zielezinski ♦ 8.5k
2
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1
answer
250
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Answer:
A: I want Blast old
... You can download executables of old BLAST (in all versions) from the NCBI ftp server: [ftp://ftp.ncbi.nlm.nih.gov/blast//executables/legacy.NOTSUPPORTED/2.2.26/blast-2.2.26-x64-win64.exe][1].
[1]: ftp://ftp.ncbi.nlm.nih.gov/blast//executables/legacy.NOTSUPPORTED/2.2.26/blast-2.2.26-x64-win64.exe ...
written 4 months ago by
a.zielezinski ♦ 8.5k
3
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168
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answers
... Generate all-versus-all pairwise global alignments in set A and calculate mean percent identity with standard deviation. Do the same for the sequences within set B. Then, depending on the distribution of identities apply t-test or Mann-Whitney test to see whether the difference between the two sets ...
written 4 months ago by
a.zielezinski ♦ 8.5k
0
votes
2
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679
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2
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... Thank you very much. This feature is very helpful. I'm already showing FlexiDot to my students. ...
written 4 months ago by
a.zielezinski ♦ 8.5k
0
votes
2
answers
679
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2
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... Wow! That's great news. I'm looking forward to it. My best wishes to the entire FlexiDot team. ...
written 5 months ago by
a.zielezinski ♦ 8.5k
1
vote
2
answers
679
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2
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... It would be great to have an option to display dotplots according to cartesian coordinate system (i.e., Y axis from bottom to top, rather than from top to bottom). ...
written 5 months ago by
a.zielezinski ♦ 8.5k
0
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2
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679
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2
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... IMO, the best software for creating dotplots. ...
written 5 months ago by
a.zielezinski ♦ 8.5k
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